View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5306_high_2 (Length: 452)
Name: NF5306_high_2
Description: NF5306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5306_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 157 - 322
Target Start/End: Original strand, 35443205 - 35443371
Alignment:
| Q |
157 |
acaaacataaaa-aaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatatcattag |
255 |
Q |
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| T |
35443205 |
acaaacataaaaaaaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatatcattag |
35443304 |
T |
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| Q |
256 |
agagaggtcaattaattacctggtcaacatcttgacgagtaataagagtatgcattgcggatccact |
322 |
Q |
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| T |
35443305 |
agagaggtcaattaattacctggtcaacatcttgacgagtaataagagtatgcattgcggatccact |
35443371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 35442988 - 35443146
Alignment:
| Q |
1 |
atttaaccacttattttacataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
100 |
Q |
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| T |
35442988 |
atttaaccacttattttaaataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
35443087 |
T |
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| Q |
101 |
atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
159 |
Q |
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| T |
35443088 |
atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
35443146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 379 - 445
Target Start/End: Complemental strand, 43075244 - 43075178
Alignment:
| Q |
379 |
tcagtggtccattccttcttccctttcacaccattttcactttcattctcttctgtacctctctgct |
445 |
Q |
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| T |
43075244 |
tcagtggtccattccttcttccctttcacaccattttcactttcattctcttctgtacctctctgct |
43075178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 16780358 - 16780329
Alignment:
| Q |
6 |
accacttattttacataaatatatgtattt |
35 |
Q |
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| T |
16780358 |
accacttattttacataaatatatgtattt |
16780329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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