View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5306_high_4 (Length: 380)

Name: NF5306_high_4
Description: NF5306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5306_high_4
NF5306_high_4
[»] chr4 (15 HSPs)
chr4 (97-168)||(26444584-26444655)
chr4 (97-168)||(46739871-46739942)
chr4 (97-167)||(35659455-35659525)
chr4 (97-166)||(19567235-19567304)
chr4 (100-167)||(12622069-12622136)
chr4 (97-147)||(12622166-12622216)
chr4 (3-46)||(21061317-21061360)
chr4 (97-167)||(16027372-16027442)
chr4 (97-167)||(35659355-35659425)
chr4 (97-147)||(44024856-44024906)
chr4 (3-46)||(15608085-15608128)
chr4 (4-46)||(15098826-15098868)
chr4 (34-76)||(38106996-38107038)
chr4 (6-43)||(50159809-50159846)
chr4 (115-147)||(3484485-3484517)
[»] chr2 (12 HSPs)
chr2 (70-169)||(21317011-21317110)
chr2 (70-168)||(21337002-21337100)
chr2 (97-168)||(1385016-1385087)
chr2 (97-167)||(1385117-1385187)
chr2 (97-147)||(10744580-10744630)
chr2 (113-167)||(21367510-21367564)
chr2 (3-38)||(10898272-10898307)
chr2 (3-38)||(19357585-19357620)
chr2 (166-211)||(1385016-1385061)
chr2 (209-261)||(1385109-1385161)
chr2 (6-46)||(22689440-22689480)
chr2 (115-147)||(32215770-32215802)
[»] chr3 (22 HSPs)
chr3 (70-167)||(17206804-17206901)
chr3 (97-168)||(17206740-17206811)
chr3 (97-167)||(24545350-24545420)
chr3 (97-167)||(24549327-24549397)
chr3 (97-167)||(24553953-24554023)
chr3 (97-167)||(24557012-24557082)
chr3 (101-164)||(54331675-54331738)
chr3 (7-59)||(13523755-13523807)
chr3 (97-147)||(11191225-11191275)
chr3 (97-143)||(12860502-12860548)
chr3 (97-147)||(16180665-16180715)
chr3 (3-45)||(43890742-43890784)
chr3 (1-38)||(15024792-15024829)
chr3 (7-59)||(13521059-13521111)
chr3 (3-38)||(6806913-6806948)
chr3 (3-46)||(11887765-11887808)
chr3 (3-38)||(35066055-35066090)
chr3 (4-38)||(19574479-19574513)
chr3 (3-32)||(19569743-19569772)
chr3 (3-44)||(20416911-20416952)
chr3 (209-261)||(17206857-17206909)
chr3 (3-43)||(46751741-46751781)
[»] scaffold1256 (2 HSPs)
scaffold1256 (97-169)||(579-651)
scaffold1256 (97-167)||(681-751)
[»] chr6 (19 HSPs)
chr6 (97-167)||(23492817-23492887)
chr6 (97-167)||(23498415-23498485)
chr6 (97-166)||(19958208-19958277)
chr6 (97-168)||(22555875-22555946)
chr6 (7-73)||(17104914-17104980)
chr6 (97-147)||(23492734-23492784)
chr6 (97-147)||(23498332-23498382)
chr6 (7-75)||(19657163-19657231)
chr6 (3-46)||(31736091-31736134)
chr6 (1-43)||(15895579-15895621)
chr6 (3-46)||(18260390-18260433)
chr6 (3-38)||(19774653-19774688)
chr6 (3-74)||(22212759-22212828)
chr6 (3-38)||(22804864-22804899)
chr6 (3-46)||(23083537-23083580)
chr6 (209-261)||(23492809-23492861)
chr6 (209-261)||(23498407-23498459)
chr6 (115-147)||(23991898-23991930)
chr6 (115-147)||(34962761-34962793)
[»] chr1 (15 HSPs)
chr1 (97-167)||(44891318-44891388)
chr1 (7-76)||(41230389-41230458)
chr1 (97-167)||(17904357-17904427)
chr1 (97-167)||(24721121-24721191)
chr1 (97-167)||(45473852-45473922)
chr1 (97-144)||(6832986-6833033)
chr1 (97-168)||(44891227-44891298)
chr1 (3-46)||(21238532-21238575)
chr1 (3-38)||(22349163-22349198)
chr1 (3-38)||(24724054-24724089)
chr1 (3-46)||(42696510-42696553)
chr1 (4-46)||(45754261-45754303)
chr1 (96-132)||(12709839-12709875)
chr1 (115-147)||(14239064-14239096)
chr1 (209-261)||(44891344-44891396)
[»] scaffold0032 (1 HSPs)
scaffold0032 (7-76)||(63744-63813)
[»] scaffold0004 (1 HSPs)
scaffold0004 (7-75)||(198791-198859)
[»] chr5 (12 HSPs)
chr5 (93-165)||(26646366-26646438)
chr5 (97-168)||(6551786-6551857)
chr5 (97-164)||(6551916-6551983)
chr5 (96-167)||(12354851-12354922)
chr5 (97-147)||(14027168-14027218)
chr5 (3-46)||(25251111-25251154)
chr5 (3-46)||(25314896-25314939)
chr5 (3-46)||(25742641-25742684)
chr5 (106-161)||(8834459-8834514)
chr5 (3-38)||(16226601-16226636)
chr5 (3-38)||(20565024-20565059)
chr5 (97-147)||(8505025-8505075)
[»] scaffold0231 (1 HSPs)
scaffold0231 (97-168)||(19129-19200)
[»] scaffold0063 (1 HSPs)
scaffold0063 (97-168)||(61447-61518)
[»] scaffold0011 (2 HSPs)
scaffold0011 (97-167)||(39599-39669)
scaffold0011 (97-167)||(39499-39569)
[»] scaffold0061 (1 HSPs)
scaffold0061 (7-74)||(20094-20161)
[»] scaffold0108 (3 HSPs)
scaffold0108 (97-167)||(8221-8291)
scaffold0108 (3-38)||(4905-4940)
scaffold0108 (209-261)||(8213-8265)
[»] chr8 (22 HSPs)
chr8 (97-167)||(2718068-2718138)
chr8 (97-167)||(36733872-36733942)
chr8 (7-75)||(5759837-5759905)
chr8 (96-167)||(22473109-22473180)
chr8 (97-167)||(22473210-22473280)
chr8 (97-161)||(6574350-6574414)
chr8 (97-164)||(18820422-18820489)
chr8 (3-46)||(23947069-23947112)
chr8 (97-168)||(36406297-36406368)
chr8 (97-147)||(18820339-18820389)
chr8 (1-46)||(17908148-17908193)
chr8 (3-46)||(17217376-17217419)
chr8 (3-46)||(22244194-22244237)
chr8 (3-46)||(23888515-23888558)
chr8 (3-38)||(22238711-22238746)
chr8 (3-38)||(22584958-22584993)
chr8 (3-38)||(39696067-39696102)
chr8 (3-38)||(42267044-42267079)
chr8 (3-43)||(13665683-13665723)
chr8 (3-43)||(13724958-13724998)
chr8 (115-147)||(16414120-16414152)
chr8 (115-147)||(32121123-32121155)
[»] chr7 (20 HSPs)
chr7 (97-168)||(9744447-9744518)
chr7 (97-167)||(9744357-9744427)
chr7 (97-167)||(15577259-15577329)
chr7 (3-46)||(15281051-15281094)
chr7 (97-147)||(13134276-13134326)
chr7 (98-143)||(20253970-20254015)
chr7 (4-44)||(11053440-11053480)
chr7 (167-210)||(9744357-9744400)
chr7 (3-38)||(14220462-14220497)
chr7 (3-38)||(14257362-14257397)
chr7 (3-38)||(16578742-16578777)
chr7 (3-38)||(16581490-16581525)
chr7 (3-38)||(16586885-16586920)
chr7 (3-46)||(17130960-17131003)
chr7 (3-38)||(32300293-32300328)
chr7 (3-38)||(47093736-47093771)
chr7 (4-46)||(33000752-33000794)
chr7 (3-32)||(4070524-4070553)
chr7 (1-46)||(16075875-16075920)
chr7 (6-46)||(9390262-9390302)
[»] scaffold0453 (1 HSPs)
scaffold0453 (97-143)||(6012-6058)
[»] scaffold0213 (1 HSPs)
scaffold0213 (97-167)||(17854-17924)
[»] scaffold0010 (1 HSPs)
scaffold0010 (3-46)||(127637-127680)
[»] scaffold0628 (1 HSPs)
scaffold0628 (97-164)||(4850-4918)
[»] scaffold0083 (2 HSPs)
scaffold0083 (3-46)||(11924-11967)
scaffold0083 (3-46)||(7790-7833)
[»] scaffold0877 (1 HSPs)
scaffold0877 (7-74)||(3591-3659)
[»] scaffold0065 (1 HSPs)
scaffold0065 (3-43)||(54665-54705)
[»] scaffold0445 (1 HSPs)
scaffold0445 (3-46)||(3183-3226)
[»] scaffold0331 (2 HSPs)
scaffold0331 (4-43)||(13333-13372)
scaffold0331 (4-43)||(13533-13572)
[»] scaffold0285 (1 HSPs)
scaffold0285 (3-38)||(22422-22457)
[»] scaffold0227 (1 HSPs)
scaffold0227 (3-46)||(27600-27643)
[»] scaffold0220 (1 HSPs)
scaffold0220 (3-46)||(17227-17270)
[»] scaffold0151 (1 HSPs)
scaffold0151 (3-46)||(23960-24003)
[»] scaffold0113 (1 HSPs)
scaffold0113 (96-147)||(33543-33594)
[»] scaffold0077 (1 HSPs)
scaffold0077 (3-38)||(29085-29120)
[»] scaffold0042 (1 HSPs)
scaffold0042 (3-46)||(28070-28113)
[»] scaffold0026 (1 HSPs)
scaffold0026 (3-38)||(23327-23362)
[»] scaffold0241 (2 HSPs)
scaffold0241 (4-38)||(1013-1047)
scaffold0241 (3-33)||(4518-4548)
[»] scaffold0096 (1 HSPs)
scaffold0096 (4-38)||(12994-13028)
[»] scaffold0439 (1 HSPs)
scaffold0439 (97-146)||(3135-3184)
[»] scaffold0716 (1 HSPs)
scaffold0716 (115-147)||(4090-4122)
[»] scaffold0054 (1 HSPs)
scaffold0054 (95-147)||(66627-66679)
[»] scaffold0023 (1 HSPs)
scaffold0023 (115-147)||(18433-18465)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 26444584 - 26444655
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||    
T  26444584 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacaatgcttcacataaacaacaa 26444655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 46739871 - 46739942
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||  || |||||||||||||    
T  46739871 ttcacatagttccaactataaatcatcaatcaacttcaaatcatcattaccaatgtttcacataaacaacaa 46739942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 35659455 - 35659525
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||||||| |||||| |||||||||||| |||||||||||||||||||||| || ||| ||||||||||||    
T  35659455 ttcacatacttccaactataaatcatcattcaacttcaaatcatcattaacaatgcttcacataaacaaca 35659525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 19567304 - 19567235
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaac 166  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||| || ||| |||||||||||    
T  19567304 ttcacataattccaactataaatcatcaattaacttcaaatcatcattaacaatgcttcacataaacaac 19567235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 12622069 - 12622136
Alignment:
Q  100 acatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||||| || ||| ||||||||||||    
T  12622069 acataattccaactataaatcatcaattaacttcaaatcatcattaacaatgcttcacataaacaaca 12622136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 12622166 - 12622216
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    |||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  12622166 ttcacataattccaactataaatcatcaattaacttcaaatcatcattaac 12622216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 21061317 - 21061360
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  21061317 ttaataataataattcttcatataatacttcattaacaactcat 21061360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 16027442 - 16027372
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||||||| |||||| ||||||||||||   ||||||||||||||||||||  | ||| ||||||||||||    
T  16027442 ttcacataattccaactataaatcatcagctaacttcaaatcatcattaacattgcttcacataaacaaca 16027372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 35659355 - 35659425
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||| | | |||||||||| | ||||||||||||||||||| || || ||| ||||||||||||    
T  35659355 ttcacatagtttcgactataaatcattattcaacttcaaatcatcatttacaatgcttcacataaacaaca 35659425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 44024906 - 44024856
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    |||||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  44024906 ttcacataattccaactatacatcatcaattaacttcaaatcatcattaac 44024856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 15608085 - 15608128
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||| ||||||||||||||||||||||| |||| |||||||    
T  15608085 ttaataacaataattcttcatatagtacttcattaataactcat 15608128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 15098826 - 15098868
Alignment:
Q  4 taataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||    
T  15098826 taataataataatacttcataaagtacttcattaacaactcat 15098868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 38106996 - 38107038
Alignment:
Q  34 tttaacaactcataagcaacaccatgtaatcatcataacaaca 76  Q
    ||||||||||||||  ||||| |||||||||||||||||||||    
T  38106996 tttaacaactcatagacaacatcatgtaatcatcataacaaca 38107038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 50159809 - 50159846
Alignment:
Q  6 ataataataattcttcatatagtacttctttaacaact 43  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  50159809 ataataataattcttcatataatacttcattaacaact 50159846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 3484485 - 3484517
Alignment:
Q  115 taaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||||||| |||||||||||||    
T  3484485 taaatcatcaatcaacttctaatcatcattaac 3484517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 21317110 - 21317011
Alignment:
Q  70 aacaacatcaattagtaatacatatatttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaat 169  Q
    ||||||| |||| |||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||||    
T  21317110 aacaacagcaataagtaatattgatacttcacatagttccaattataaatcatcaatcaacttcaaatcatcatcaacaatgcttcacataaacaacaat 21317011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 21337100 - 21337002
Alignment:
Q  70 aacaacatcaattagtaatacatatatttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    ||||||| |||| |||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  21337100 aacaacaacaataagtaatattgatacttcacatagttccaattataaatcatcaatcaacttcaaatcatcatcaacaatgcttcacataaacaacaa 21337002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 1385087 - 1385016
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  1385087 ttcacatagtttcaactataaattatcaatcaacttcaaatcatcattaacgatgcttcacataaacaacaa 1385016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 1385187 - 1385117
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  1385187 ttcacatagttccaactataaattatcaattaacttcaaatcatcattaacgatgcttcacataaacaaca 1385117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 10744630 - 10744580
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    |||||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  10744630 ttcacataattccaactatacatcatcaattaacttcaaatcatcattaac 10744580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 21367510 - 21367564
Alignment:
Q  113 tataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||||||||||||||||||| ||| || ||| ||||||| ||||    
T  21367510 tataaatcatcaatcaacttcaaatcatcatcaacaatgcttcacataaataaca 21367564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 10898307 - 10898272
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10898307 ttaataataataattcttcatatagtacttcattaa 10898272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 19357585 - 19357620
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  19357585 ttaataataataattcttcatatagtacttcattaa 19357620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 1385061 - 1385016
Alignment:
Q  166 caatcaacttcaaatcatctttagtgatacttcacataaacaacaa 211  Q
    ||||||||||||||||||| |||  ||| |||||||||||||||||    
T  1385061 caatcaacttcaaatcatcattaacgatgcttcacataaacaacaa 1385016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 1385161 - 1385109
Alignment:
Q  209 caatcaacttcaaattatctttaatgatacttcacatagacaacataaacaac 261  Q
    |||| |||||||||| ||| |||| ||| ||||||||| ||||||||||||||    
T  1385161 caattaacttcaaatcatcattaacgatgcttcacataaacaacataaacaac 1385109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 22689440 - 22689480
Alignment:
Q  6 ataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||| ||||||| |||||||| ||||||||||||    
T  22689440 ataataataatacttcataaagtacttcattaacaactcat 22689480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 32215802 - 32215770
Alignment:
Q  115 taaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||||||| |||||||||||||    
T  32215802 taaatcatcaatcaacttctaatcatcattaac 32215770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 17206804 - 17206901
Alignment:
Q  70 aacaacatcaattagtaatacatatatttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||| |||||| |||||   ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  17206804 aacaacaacaattaataatattgatacttcacatagttccaactataaatcatcaatcaacttcaaatcatcattaaccatgcttcacataaacaaca 17206901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 17206740 - 17206811
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| || || ||| |||||||||||||    
T  17206740 ttcacatagctccaactataaatcatcaatcaacttcaaatcatcattcaccatgcttcacataaacaacaa 17206811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 24545350 - 24545420
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||| || ||| | ||||||||||    
T  24545350 ttcacatagttccaactataaatcataaatcaacttcaaatcatcattaacaatgcttcatataaacaaca 24545420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 24549397 - 24549327
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||| | ||||||||||    
T  24549397 ttcacatagttccaactataaatcatcaatcaacttcaaatcgtcattaacaatgcttcatataaacaaca 24549327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 24554023 - 24553953
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||| | ||||||||||    
T  24554023 ttcacatagttccaactataaatcatcaatcaacttcaaatcgtcattaacaatgcttcatataaacaaca 24553953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 24557082 - 24557012
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||| | ||||||||||    
T  24557082 ttcacatagttccaactataaatcatcaatcaacttcaaatcgtcattaacaatgcttcatataaacaaca 24557012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 54331738 - 54331675
Alignment:
Q  101 catagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaaca 164  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||| || ||| |||||||||    
T  54331738 catagttccaactataaatcatcattcaacttcaaatcatcattaaccatgcttcacataaaca 54331675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 13523807 - 13523755
Alignment:
Q  7 taataataattcttcatatagtacttctttaacaactcataagcaacaccatg 59  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||    
T  13523807 taataataattcttcatataatacttctttaacaactcctaaacaacatcatg 13523755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 11191225 - 11191275
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    |||||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  11191225 ttcacataattccaactatacatcatcaattaacttcaaatcatcattaac 11191275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 12860548 - 12860502
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcat 143  Q
    |||||||| || ||| |||||||||||||||||||||||||||||||    
T  12860548 ttcacataatttcaactataaatcatcaatcaacttcaaatcatcat 12860502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 16180715 - 16180665
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    |||||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  16180715 ttcacataattccaactatacatcatcaattaacttcaaatcatcattaac 16180665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 43890784 - 43890742
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactca 45  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  43890784 ttaataataataattcttcatatagtacttcattaacagctca 43890742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15024829 - 15024792
Alignment:
Q  1 agttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  15024829 agttaataataataattcttcatatagtacttcattaa 15024792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 13521111 - 13521059
Alignment:
Q  7 taataataattcttcatatagtacttctttaacaactcataagcaacaccatg 59  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| ||||| ||||    
T  13521111 taataatatttcttcatataatacttctttaacaactcctaaacaacatcatg 13521059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 6806948 - 6806913
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  6806948 ttaataataataattcttcatatagtacttcattaa 6806913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 11887808 - 11887765
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||    
T  11887808 ttaattataataattcttcatatagtacttcattaataactcat 11887765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 35066090 - 35066055
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  35066090 ttaataataataattcttcatatagtacttcattaa 35066055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 19574479 - 19574513
Alignment:
Q  4 taataataataattcttcatatagtacttctttaa 38  Q
    |||||||||||||||||||||||||||||| ||||    
T  19574479 taataataataattcttcatatagtacttcattaa 19574513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 19569772 - 19569743
Alignment:
Q  3 ttaataataataattcttcatatagtactt 32  Q
    ||||||||||||||||||||||||||||||    
T  19569772 ttaataataataattcttcatatagtactt 19569743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 20416911 - 20416952
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactc 44  Q
    |||||||||||||||||||| |||||||||| |||| |||||    
T  20416911 ttaataataataattcttcacatagtacttcattaataactc 20416952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 17206857 - 17206909
Alignment:
Q  209 caatcaacttcaaattatctttaatgatacttcacatagacaacataaacaac 261  Q
    ||||||||||||||| ||| ||||  || ||||||||| ||||||||||||||    
T  17206857 caatcaacttcaaatcatcattaaccatgcttcacataaacaacataaacaac 17206909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 46751741 - 46751781
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaact 43  Q
    ||||| |||||||||||||||||| |||||| |||||||||    
T  46751741 ttaatcataataattcttcatataatacttcattaacaact 46751781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 651 - 579
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaat 169  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  651 ttcacatagttccaactataaatcatcaatcaacttcaaatcatcattaacaatgcttcacataaacaacaat 579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 751 - 681
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||||||| |||||| |||||||||||||||||||||||||||| |||||| || ||| ||||||||||||    
T  751 ttcacataattccaactataaatcatcaatcaacttcaaatcataattaacaatgcttcacataaacaaca 681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 23492887 - 23492817
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  23492887 ttcacatagttccaactataaatcatcaatcaacttcaaatcatcattaacaatgcttcacataaacaaca 23492817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 23498485 - 23498415
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  23498485 ttcacatagttccaactataaatcatcaatcaacttcaaatcatcattaacaatgcttcacataaacaaca 23498415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 19958277 - 19958208
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaac 166  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||||    
T  19958277 ttcacatagttccaaatataaatcatcaatcaacttcaaatcatcattaacaatgcttcacataaacaac 19958208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 22555875 - 22555946
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||    
T  22555875 ttcacatagttccaactataaataatcaatcaacttcaaatcatcattaacaatgcttcacataaacaacaa 22555946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 17104914 - 17104980
Alignment:
Q  7 taataataattcttcatatagtacttctttaacaactcataagcaacaccatgtaatcatcataaca 73  Q
    ||||||| |||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  17104914 taataattattcttcatataatacttctttaacaactcctaaacaacatcatgtaatcatcataaca 17104980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 23492784 - 23492734
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  23492784 ttcacatagttccaactctaaatcatcaatcaacttcaaatcatcattaac 23492734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 23498382 - 23498332
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  23498382 ttcacatagttccaactctaaatcatcaatcaacttcaaatcatcattaac 23498332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 19657231 - 19657163
Alignment:
Q  7 taataataattcttcatatagtacttctttaacaactcataagcaacaccatgtaatcatcataacaac 75  Q
    ||||||||||| |||||||  |||||||||||||| || ||| ||||| ||||||||||||||||||||    
T  19657231 taataataattattcatatgatacttctttaacaattcctaatcaacatcatgtaatcatcataacaac 19657163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 31736134 - 31736091
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  31736134 ttaataataataattcttcatatagtacttcattaacaactcat 31736091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15895579 - 15895621
Alignment:
Q  1 agttaataataataattcttcatatagtacttctttaacaact 43  Q
    |||||||||||||||||||||||||| |||||| |||||||||    
T  15895579 agttaataataataattcttcatataatacttcattaacaact 15895621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 18260433 - 18260390
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    |||| ||||||||||||||||||| |||||| ||||||||||||    
T  18260433 ttaacaataataattcttcatataatacttcattaacaactcat 18260390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 19774688 - 19774653
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  19774688 ttaataataataattcttcatatagtacttcattaa 19774653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 22212828 - 22212759
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcataagcaacaccatgtaatcatcataacaa 74  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||| ||| | || ||||||||||| ||||    
T  22212828 ttaataataataattct-catatagtacttcatcaacaactcataa-caatatcaagtaatcatcatgacaa 22212759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 22804864 - 22804899
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  22804864 ttaataataataattcttcatatagtacttcattaa 22804899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 23083580 - 23083537
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    |||||||||||||||||||||||| ||||||  |||||||||||    
T  23083580 ttaataataataattcttcatataatacttcagtaacaactcat 23083537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 23492861 - 23492809
Alignment:
Q  209 caatcaacttcaaattatctttaatgatacttcacatagacaacataaacaac 261  Q
    ||||||||||||||| ||| ||||  || ||||||||| ||||||||||||||    
T  23492861 caatcaacttcaaatcatcattaacaatgcttcacataaacaacataaacaac 23492809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 23498459 - 23498407
Alignment:
Q  209 caatcaacttcaaattatctttaatgatacttcacatagacaacataaacaac 261  Q
    ||||||||||||||| ||| ||||  || ||||||||| ||||||||||||||    
T  23498459 caatcaacttcaaatcatcattaacaatgcttcacataaacaacataaacaac 23498407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 23991898 - 23991930
Alignment:
Q  115 taaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||||||| |||||||||||||    
T  23991898 taaatcatcaatcaacttctaatcatcattaac 23991930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 34962761 - 34962793
Alignment:
Q  115 taaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||||||| |||||||||||||    
T  34962761 taaatcatcaatcaacttctaatcatcattaac 34962793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 44891318 - 44891388
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  44891318 ttcacatagttccaactataaatcatcaatcaacttcaaatcatcattaacaatgcttcacataaacaaca 44891388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 41230389 - 41230458
Alignment:
Q  7 taataataattcttcatatagtacttctttaacaactcataagcaacaccatgtaatcatcataacaaca 76  Q
    ||||||||||||||||| || |||||||||| |||||||||| ||||| |||||||||||||||||||||    
T  41230389 taataataattcttcatgtaatacttctttatcaactcataaacaacatcatgtaatcatcataacaaca 41230458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 17904427 - 17904357
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||| || ||| |||| |||||||    
T  17904427 ttcacatagttccaactataaatcatcaatcgacttcaaatcatcattaaccatgcttcacattaacaaca 17904357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 24721191 - 24721121
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||||||| ||| || |||||||||||||| |||||||||||||||||||  || ||| ||||||||||||    
T  24721191 ttcacataattctaactataaatcatcaattaacttcaaatcatcattaataatgcttcacataaacaaca 24721121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 45473852 - 45473922
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||||||| |||||| |||||||||||||| |||||  ||||||||||||| || ||| ||||||||||||    
T  45473852 ttcacataattccaactataaatcatcaattaactttgaatcatcattaacaatgcttcacataaacaaca 45473922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 6832986 - 6833033
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcatt 144  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||    
T  6832986 ttcacataattccaactataaatcatcaattaacttcaaatcatcatt 6833033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 44891227 - 44891298
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    |||||||| |||||| |||| ||||||||| |||||||||||||||||||| ||  |  |||||||||||||    
T  44891227 ttcacataattccaactatacatcatcaattaacttcaaatcatcattaacaatggtccacataaacaacaa 44891298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 21238532 - 21238575
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||    
T  21238532 ttaataatattaattcttcatatagttcttcattaacaactcat 21238575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 22349163 - 22349198
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  22349163 ttaataataataattcttcatatagtacttcattaa 22349198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 24724089 - 24724054
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  24724089 ttaataataataattcttcatatagtacttcattaa 24724054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 42696510 - 42696553
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    |||||||||||||||||||||||| |||||| |||| |||||||    
T  42696510 ttaataataataattcttcatatactacttcattaataactcat 42696553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 45754261 - 45754303
Alignment:
Q  4 taataataataattcttcatatagtacttctttaacaactcat 46  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||    
T  45754261 taataataataattctccatatagtaattcattaacaactcat 45754303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 12709839 - 12709875
Alignment:
Q  96 tttcacatagttccaattataaatcatcaatcaactt 132  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  12709839 tttcacataattccaattataaatcatcaattaactt 12709875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 14239096 - 14239064
Alignment:
Q  115 taaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||||||| |||||||||||||    
T  14239096 taaatcatcaatcaacttctaatcatcattaac 14239064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 44891344 - 44891396
Alignment:
Q  209 caatcaacttcaaattatctttaatgatacttcacatagacaacataaacaac 261  Q
    ||||||||||||||| ||| ||||  || ||||||||| ||||||||||||||    
T  44891344 caatcaacttcaaatcatcattaacaatgcttcacataaacaacataaacaac 44891396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 63813 - 63744
Alignment:
Q  7 taataataattcttcatatagtacttctttaacaactcataagcaacaccatgtaatcatcataacaaca 76  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  63813 taataataattcttcatataatacttctttaacaactcctaaacaacatcatgtaatcatcataacaaca 63744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 198859 - 198791
Alignment:
Q  7 taataataattcttcatatagtacttctttaacaactcataagcaacaccatgtaatcatcataacaac 75  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  198859 taataataattcttcatataatacttctttaacaactcctaaacaacatcatgtaatcatcataacaac 198791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 26646366 - 26646438
Alignment:
Q  93 atatttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaa 165  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || ||| ||||||||||    
T  26646366 atatttcacatagttccaactataaatcatcaatcaacttcaaatcatcatcaacaatgcttcacataaacaa 26646438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 6551857 - 6551786
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  || |||||||||||||    
T  6551857 ttcacatagttccaactataaatcatcaatcaacttcaaatcatcattaaccatgtttcacataaacaacaa 6551786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 6551983 - 6551916
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaaca 164  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||    
T  6551983 ttcacatagttccaactataaatcatcaatcaacttcaaatcatcattaaccatgcttcacataaaca 6551916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 12354851 - 12354922
Alignment:
Q  96 tttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||| |||| || ||| ||||||||||||    
T  12354851 tttcacataattccaactataaatcatcaatcaacttcaaatcatcaataacaatgcttcacataaacaaca 12354922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 14027218 - 14027168
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    |||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  14027218 ttcacataattccaactataaatcatcaattaacttcaaatcatcattaac 14027168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 25251154 - 25251111
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  25251154 ttaataataataattcttcatatagtaattcattaacaactcat 25251111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 25314939 - 25314896
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  25314939 ttaataataataattcttcatatagtaattcattaacaactcat 25314896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 25742641 - 25742684
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  25742641 ttaataataataattcttcatataatacttcattaacaactcat 25742684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 8834514 - 8834459
Alignment:
Q  106 ttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataa 161  Q
    |||||| |||| ||||||||| |||||||||||||||||||| || ||| ||||||    
T  8834514 ttccaactatacatcatcaattaacttcaaatcatcattaacaatgcttcacataa 8834459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 16226601 - 16226636
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  16226601 ttaataataataattcttcatatagtacttcattaa 16226636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 20565024 - 20565059
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  20565024 ttaataataataattcttcatatagtacttcattaa 20565059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 8505075 - 8505025
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||| ||| |||| ||||||||| |||||| |||||||||||||    
T  8505075 ttcacatagtttcaactatacatcatcaattaacttcgaatcatcattaac 8505025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 19200 - 19129
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||    
T  19200 ttcacttagttccaactataaatcatcaatcaacttcaaatcatcattaacaatgcttcacataaacaacaa 19129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 61447 - 61518
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||| |||||||||||||    
T  61447 ttcacatagttccaactataaatcatcaattaacttcaaatcatcattaacaatgcttcacataaacaacaa 61518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 39599 - 39669
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| | || ||| ||||||||||||    
T  39599 ttcacatagttccaactataaatcatcaatcaacttcaaatcatcattaccaatgcttcacataaacaaca 39669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 39499 - 39569
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||| |||||||||| |||||||||||||||||||||||||| |||||||| || ||| ||||||||||||    
T  39499 ttcatatagttccaactataaatcatcaatcaacttcaaatcttcattaacaatgcttcacataaacaaca 39569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 20161 - 20094
Alignment:
Q  7 taataataattcttcatatagtacttctttaacaactcataagcaacaccatgtaatcatcataacaa 74  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||| ||||||||    
T  20161 taataataattcttcatataatacttctttaacaactcctaaacaacatcatgtaatcagcataacaa 20094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 8291 - 8221
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  8291 ttcacatagttcaaacaataaatcatcaatcaacttcaaatcatcattaacaatgcttcacataaacaaca 8221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 4905 - 4940
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4905 ttaataataataattcttcatatagtacttcattaa 4940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 8265 - 8213
Alignment:
Q  209 caatcaacttcaaattatctttaatgatacttcacatagacaacataaacaac 261  Q
    ||||||||||||||| ||| ||||  || ||||||||| ||||||||||||||    
T  8265 caatcaacttcaaatcatcattaacaatgcttcacataaacaacataaacaac 8213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 2718138 - 2718068
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||| || ||| ||||||||||||    
T  2718138 ttcacataattccaactataaatcatcaattaacttcaaatcatcattaacaatgcttcacataaacaaca 2718068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 36733942 - 36733872
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||| || ||| ||||||||||||    
T  36733942 ttcacataattccaactataaatcatcaattaacttcaaatcatcattaacaatgcttcacataaacaaca 36733872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 5759837 - 5759905
Alignment:
Q  7 taataataattcttcatatagtacttctttaacaactcataagcaacaccatgtaatcatcataacaac 75  Q
    ||||||||||| |||||||| || |||||||||||||||||| ||||| |||||||||||| |||||||    
T  5759837 taataataatttttcatataatatttctttaacaactcataaacaacatcatgtaatcatcgtaacaac 5759905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 22473109 - 22473180
Alignment:
Q  96 tttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||| || ||| |||| |||||||    
T  22473109 tttcacataattccaactataaatcatcaattaacttcaaatcatcattaacaatgcttcacatgaacaaca 22473180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 22473210 - 22473280
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||| || ||| |||| |||||||    
T  22473210 ttcacataattccaactataaatcatcaattaacttcaaatcatcattaacaatgcttcacatgaacaaca 22473280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 6574414 - 6574350
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataa 161  Q
    |||||||| |||||| |||| ||||||||| |||||||||||||||||||| || ||||||||||    
T  6574414 ttcacataattccaactatacatcatcaattaacttcaaatcatcattaacaatgctttacataa 6574350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 18820489 - 18820422
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaaca 164  Q
    ||||||| ||||||| | |||||||||||||||||| |||||||||||||| || ||| |||||||||    
T  18820489 ttcacattgttccaactgtaaatcatcaatcaacttaaaatcatcattaacaatgcttcacataaaca 18820422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 23947069 - 23947112
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  23947069 ttaataataataattcttcatatagtacttcattaacaactcat 23947112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 36406368 - 36406297
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    |||||||| |||||  |||||||||||||| || ||||||||||||||||| || ||| |||||||||||||    
T  36406368 ttcacataattccatctataaatcatcaattaatttcaaatcatcattaacaatgcttcacataaacaacaa 36406297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 18820389 - 18820339
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  18820389 ttcacatagttccaactataattcatcaatcaactttaaatcatcattaac 18820339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17908193 - 17908148
Alignment:
Q  1 agttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  17908193 agttaataataataattcttcatatagtacttcattaaccactcat 17908148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 17217376 - 17217419
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  17217376 ttaataataataattcttcatatagtactccattaacaactcat 17217419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 22244194 - 22244237
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    |||||||||||||| |||||||||||||||| ||||||||||||    
T  22244194 ttaataataataatacttcatatagtacttcattaacaactcat 22244237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 23888515 - 23888558
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  23888515 ttaataataataattcttcatataatacttcattaacaactcat 23888558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 22238746 - 22238711
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  22238746 ttaataataataattcttcatatagtacttcattaa 22238711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 22584993 - 22584958
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  22584993 ttaataataataattcttcatatagtacttcattaa 22584958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 39696102 - 39696067
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  39696102 ttaataataataattcttcatatagtacttcattaa 39696067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 42267079 - 42267044
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  42267079 ttaataataataattcttcatatagtacttcattaa 42267044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 13665723 - 13665683
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaact 43  Q
    ||||||||||||||||||| |||| |||||| |||||||||    
T  13665723 ttaataataataattcttcgtataatacttcattaacaact 13665683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 13724998 - 13724958
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaact 43  Q
    ||||||||||||||||||| |||| |||||| |||||||||    
T  13724998 ttaataataataattcttcgtataatacttcattaacaact 13724958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 16414152 - 16414120
Alignment:
Q  115 taaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||||||| |||||||||||||    
T  16414152 taaatcatcaatcaacttctaatcatcattaac 16414120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 32121123 - 32121155
Alignment:
Q  115 taaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||||||| |||||||||||||    
T  32121123 taaatcatcaatcaacttctaatcatcattaac 32121155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 9744518 - 9744447
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaacaa 168  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||||| | || ||| |||||||||||||    
T  9744518 ttcacatagttccaactataaatcatcatttaacttcaaatcatcattagcaatgcttcacataaacaacaa 9744447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 9744427 - 9744357
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||   || ||| ||||||||||||    
T  9744427 ttcacatagttccaactataaatcattaatcaacttcaaatcatcattagtcatgcttcacataaacaaca 9744357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 15577329 - 15577259
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||||||| || ||| |||||||||||||| ||||| |||||||||||||| || ||| ||||||||||||    
T  15577329 ttcacataatttcaactataaatcatcaattaactttaaatcatcattaacaatgcttcacataaacaaca 15577259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 15281051 - 15281094
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||||||||||||||||||||||| |||||| |||||    
T  15281051 ttaataataataattcttcatatagtacttcattaacagctcat 15281094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 13134326 - 13134276
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    |||||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  13134326 ttcacataattccaactatacatcatcaattaacttcaaatcatcattaac 13134276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 20254015 - 20253970
Alignment:
Q  98 tcacatagttccaattataaatcatcaatcaacttcaaatcatcat 143  Q
    ||||||| ||| || |||||||||||||||||||||||||||||||    
T  20254015 tcacataattcaaactataaatcatcaatcaacttcaaatcatcat 20253970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 11053440 - 11053480
Alignment:
Q  4 taataataataattcttcatatagtacttctttaacaactc 44  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  11053440 taataataataattattcatatagtacttcattaacaactc 11053480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 9744400 - 9744357
Alignment:
Q  167 aatcaacttcaaatcatctttagtgatacttcacataaacaaca 210  Q
    |||||||||||||||||| ||||| || ||||||||||||||||    
T  9744400 aatcaacttcaaatcatcattagtcatgcttcacataaacaaca 9744357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 14220497 - 14220462
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14220497 ttaataataataattcttcatatagtacttcattaa 14220462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 14257362 - 14257397
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14257362 ttaataataataattcttcatatagtacttccttaa 14257397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 16578742 - 16578777
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  16578742 ttaataataataattcttcatatagtacttcattaa 16578777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 16581490 - 16581525
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  16581490 ttaataataataattcttcatatagtacttcattaa 16581525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 16586920 - 16586885
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  16586920 ttaataataataattcttcatatagtacttcattaa 16586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 17131003 - 17130960
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||    
T  17131003 ttaataataataattcttcatgtagtaattcattaacaactcat 17130960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 32300293 - 32300328
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  32300293 ttaataataataattcttcatatagtacttcattaa 32300328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 47093736 - 47093771
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  47093736 ttaataataataattcttcatatagtacttcattaa 47093771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 33000752 - 33000794
Alignment:
Q  4 taataataataattcttcatatagtacttctttaacaactcat 46  Q
    |||||||||||||||||||||||||||||  |||| |||||||    
T  33000752 taataataataattcttcatatagtactttattaataactcat 33000794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 4070524 - 4070553
Alignment:
Q  3 ttaataataataattcttcatatagtactt 32  Q
    ||||||||||||||||||||||||||||||    
T  4070524 ttaataataataattcttcatatagtactt 4070553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16075875 - 16075920
Alignment:
Q  1 agttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    |||||||||||  ||||||||||||||| |||| ||||||||||||    
T  16075875 agttaataatatcaattcttcatatagttcttcattaacaactcat 16075920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 9390302 - 9390262
Alignment:
Q  6 ataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||| ||||||| |||||||| ||||||||||||    
T  9390302 ataataataatacttcataaagtacttcattaacaactcat 9390262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 6058 - 6012
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcat 143  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  6058 ttcacatagttccaactataaatcatcaatcaacttcaaatcatcat 6012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 17854 - 17924
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaacgatactttacataaacaaca 167  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||| |  ||| ||||||||||||    
T  17854 ttcacataattccaactataaatcatcaattaacttcaaatcatcattaacaaagcttcacataaacaaca 17924  T

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Target: scaffold0010 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 127680 - 127637
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  127680 ttaataataataattcttcatatagtacttcattaacaactcat 127637  T

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Target: scaffold0628 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 4918 - 4850
Alignment:
Q  97 ttcacatagttccaattataaatcatcaat-caacttcaaatcatcattaacgatactttacataaaca 164  Q
    |||||| |||||||| |||||||||||||| |||||||||||| |||||||| || ||| |||||||||    
T  4918 ttcacaaagttccaactataaatcatcaattcaacttcaaatcttcattaacaatgcttcacataaaca 4850  T

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Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 11967 - 11924
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||||||||||||||||||||||||| |||| |||||||    
T  11967 ttaataataataattcttcatatagtacttcattaataactcat 11924  T

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Target: scaffold0083; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 7790 - 7833
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||| ||||||||||||||||||||||| |||| |||||||    
T  7790 ttaataacaataattcttcatatagtacttcattaataactcat 7833  T

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Target: scaffold0877 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0877
Description:

Target: scaffold0877; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 3659 - 3591
Alignment:
Q  7 taataataattcttcatatag-tacttctttaacaactcataagcaacaccatgtaatcatcataacaa 74  Q
    ||||||||||||||||||||  ||||||| ||||||||||||  ||||| ||| ||||| |||||||||    
T  3659 taataataattcttcatataaatacttctctaacaactcatagacaacatcatataatcgtcataacaa 3591  T

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Target: scaffold0065 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 54665 - 54705
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaact 43  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  54665 ttaataataataattcttcatataatacttcattaacaact 54705  T

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Target: scaffold0445 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 3226 - 3183
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||    
T  3226 ttaataatattaattcttcatatagttcttcattaacaactcat 3183  T

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Target: scaffold0331 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 13372 - 13333
Alignment:
Q  4 taataataataattcttcatatagtacttctttaacaact 43  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  13372 taataataataattcttcatataatacttcattaacaact 13333  T

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Target: scaffold0331; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 13572 - 13533
Alignment:
Q  4 taataataataattcttcatatagtacttctttaacaact 43  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  13572 taataataataattcttcatataatacttcattaacaact 13533  T

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Target: scaffold0285 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 22422 - 22457
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  22422 ttaataataataattcttcatatagtacttcattaa 22457  T

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Target: scaffold0227 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 27600 - 27643
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||    
T  27600 ttaataatattaattcttcatatagttcttcattaacaactcat 27643  T

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Target: scaffold0220 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 17227 - 17270
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||    
T  17227 ttaattataataattcttcatatagtacttcattaataactcat 17270  T

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Target: scaffold0151 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 23960 - 24003
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||    
T  23960 ttaataatagtaattcttcataaagtacttcattaacaactcat 24003  T

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Target: scaffold0113 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 33543 - 33594
Alignment:
Q  96 tttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||| |||||| |||| ||||||| | ||||||||||||||||||||    
T  33543 tttcacataattccaactatacatcatcatttaacttcaaatcatcattaac 33594  T

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Target: scaffold0077 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 29085 - 29120
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  29085 ttaataataataattcttcatatagtacttcattaa 29120  T

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Target: scaffold0042 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 28070 - 28113
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaacaactcat 46  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||    
T  28070 ttaataataataatccttcatataatacttcattaacaactcat 28113  T

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Target: scaffold0026 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 23327 - 23362
Alignment:
Q  3 ttaataataataattcttcatatagtacttctttaa 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  23327 ttaataataataattcttcatatagtacttcattaa 23362  T

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Target: scaffold0241 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 1013 - 1047
Alignment:
Q  4 taataataataattcttcatatagtacttctttaa 38  Q
    |||||||||||||||||||||||||||||| ||||    
T  1013 taataataataattcttcatatagtacttcattaa 1047  T

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Target: scaffold0241; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 4518 - 4548
Alignment:
Q  3 ttaataataataattcttcatatagtacttc 33  Q
    |||||||||||||||||||||||||||||||    
T  4518 ttaataataataattcttcatatagtacttc 4548  T

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Target: scaffold0096 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 12994 - 13028
Alignment:
Q  4 taataataataattcttcatatagtacttctttaa 38  Q
    |||||||||||||||||||||||||||||| ||||    
T  12994 taataataataattcttcatatagtacttcattaa 13028  T

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Target: scaffold0439 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 3135 - 3184
Alignment:
Q  97 ttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaa 146  Q
    |||||||| |||||| |||| ||||||||| |||||| ||||||||||||    
T  3135 ttcacataattccaactatacatcatcaattaacttcgaatcatcattaa 3184  T

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Target: scaffold0716 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 4090 - 4122
Alignment:
Q  115 taaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||||||| |||||||||||||    
T  4090 taaatcatcaatcaacttctaatcatcattaac 4122  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 66679 - 66627
Alignment:
Q  95 atttcacatagttccaattataaatcatcaatcaacttcaaatcatcattaac 147  Q
    |||||||||| |||||| |||  ||||||||| ||||||||||||| ||||||    
T  66679 atttcacataattccaactatgcatcatcaattaacttcaaatcattattaac 66627  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 18465 - 18433
Alignment:
Q  115 taaatcatcaatcaacttcaaatcatcattaac 147  Q
    ||||||||||||||||||| |||||||||||||    
T  18465 taaatcatcaatcaacttctaatcatcattaac 18433  T

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