View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5306_high_8 (Length: 328)
Name: NF5306_high_8
Description: NF5306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5306_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 22559484 - 22559323
Alignment:
| Q |
1 |
caaatcacattggtaaattatcatccattgcaaaatcatcgaagaaaattgaacaaaacgaaaatgttaaaaccctaactgatttgacgaggacgagatc |
100 |
Q |
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| T |
22559484 |
caaatcacattggtaaattatcatccattgcaaaatcatcgaagaaaattgaacaaaacgaaaatgttaaaaccctaactgatttgacgaggacgagatc |
22559385 |
T |
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| Q |
101 |
tggcggagacgagaggagagcaagagaaaacgttggcggcggtgacagtgggagtgttgtcg |
162 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
22559384 |
tggcggaaacgagaggagagcaagagaaaacattggcggcggtgacagtgggagtgctgtcg |
22559323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 215 - 318
Target Start/End: Complemental strand, 22559270 - 22559167
Alignment:
| Q |
215 |
ttgaatcgacgatggatttcattgtagttttcttcttcgatttgaagttgttgctgagagtgtgaagtggatttgaatttacatcgattgttttttactc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22559270 |
ttgaatcgacgatggatttcattgtagttttcttcttcgatttgaagttgttgctgagagtgtgaagtggatttgaatttacatcgattgttttttactc |
22559171 |
T |
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| Q |
315 |
tgtg |
318 |
Q |
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|||| |
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| T |
22559170 |
tgtg |
22559167 |
T |
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