View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5306_high_9 (Length: 316)
Name: NF5306_high_9
Description: NF5306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5306_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 30685293 - 30684992
Alignment:
| Q |
1 |
gggtaatgcccatgtcagaaagctttacacttaaggatctatccttgattattagaacattttgaggtttcaaatttccgtgtattattcctagtttatg |
100 |
Q |
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| T |
30685293 |
gggtaatggccatgtcagaaagctttacacttaaggatctatccttgattattagaacattttgaggtttcaaatttccgtgtattattcctagtttatg |
30685194 |
T |
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| Q |
101 |
caaatgaacaacccctgcaacaatacccctaaatttcaaaacaaaaatggaagttagtttatactaaaaatgtgtaaaataaactacacttagaatgtgg |
200 |
Q |
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| T |
30685193 |
caaatgaacaacccctgcaacaatacccctaaatttcaaaacaaaaatggaagttagtttatactaaaaatgtgtaaaataaactacacttagaatgtgg |
30685094 |
T |
|
| Q |
201 |
acaagtaagagtacaagaagaaataatgcaaacctcatcagttttagtagtagaggtgatggatggtcannnnnnnnccaaagatattctgtagtatcct |
300 |
Q |
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| T |
30685093 |
acaagtaagagtacaagaagaaataatgcaaacctcatcagttttagtagtagaggtgatggatggtcattttttttccaaagatattctgtagtatcct |
30684994 |
T |
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| Q |
301 |
tc |
302 |
Q |
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|| |
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| T |
30684993 |
tc |
30684992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 30978165 - 30977970
Alignment:
| Q |
4 |
taatgcccatgtcagaaagctttacacttaaggatctatccttgattattagaacattttgaggtttcaaatttccgtgtattattcctagtttatgcaa |
103 |
Q |
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| T |
30978165 |
taatgcccatgtcagaaagctttgcacataaggatctttccttgattaatagaacattttggggtttcaaatctcgatgtataattcctagttcatgcaa |
30978066 |
T |
|
| Q |
104 |
atgaacaacccctgcaacaatacccctaaatttcaaaacaaaaatggaagttagtttatactaaaaatgtgtaaaataaactacacttagaatgtg |
199 |
Q |
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| T |
30978065 |
atgaacaaccccggcaacaatatccctaagttgcaaaacaaaaatagaagttagtttataataaaaatgtgtaaaataaactacacttacaatgtg |
30977970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 30977232 - 30977182
Alignment:
| Q |
214 |
caagaagaaataatgcaaacctcatcagttttagtagtagaggtgatggat |
264 |
Q |
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|||||||||||||| |||||||||||| ||| ||||||||||||||||||| |
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| T |
30977232 |
caagaagaaataatacaaacctcatcaatttcagtagtagaggtgatggat |
30977182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 9858131 - 9858238
Alignment:
| Q |
4 |
taatgcccatgtcagaaagctttacacttaaggatctatccttgattattagaacattttgaggtttcaaatttccgtgtattattcctagtttatgcaa |
103 |
Q |
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|||| ||||| |||||||| || ||| ||| || || |||||||||| | ||||||||| |||||||||| | ||||||||||||||||| |||||| |
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| T |
9858131 |
taatccccatatcagaaagtttggcacataatgacctttccttgattaacaaaacattttggggtttcaaatcccggtgtattattcctagttcatgcaa |
9858230 |
T |
|
| Q |
104 |
atgaacaa |
111 |
Q |
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|||||||| |
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| T |
9858231 |
atgaacaa |
9858238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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