View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5307-Insertion-1 (Length: 838)

Name: NF5307-Insertion-1
Description: NF5307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5307-Insertion-1
NF5307-Insertion-1
[»] chr3 (4 HSPs)
chr3 (25-828)||(50669407-50670202)
chr3 (37-151)||(581034-581147)
chr3 (69-169)||(37058943-37059044)
chr3 (68-151)||(12767307-12767390)
[»] chr8 (9 HSPs)
chr8 (68-214)||(34273042-34273193)
chr8 (38-151)||(10340211-10340324)
chr8 (68-215)||(38924420-38924572)
chr8 (69-149)||(559976-560056)
chr8 (102-156)||(21150238-21150292)
chr8 (68-150)||(29204625-29204707)
chr8 (81-155)||(37616274-37616348)
chr8 (68-157)||(32729436-32729526)
chr8 (68-169)||(9030610-9030711)
[»] scaffold0018 (1 HSPs)
scaffold0018 (70-169)||(188103-188202)
[»] chr1 (13 HSPs)
chr1 (68-167)||(34123137-34123236)
chr1 (68-170)||(25484967-25485069)
chr1 (105-169)||(34062619-34062683)
chr1 (113-166)||(39126968-39127021)
chr1 (101-157)||(31847380-31847436)
chr1 (258-385)||(885200-885327)
chr1 (81-156)||(32191123-32191198)
chr1 (69-151)||(39902293-39902374)
chr1 (129-212)||(32191216-32191304)
chr1 (69-149)||(8041143-8041224)
chr1 (103-168)||(16238841-16238906)
chr1 (68-169)||(24603023-24603123)
chr1 (68-157)||(34062669-34062758)
[»] chr2 (6 HSPs)
chr2 (105-155)||(33710562-33710612)
chr2 (68-150)||(21488868-21488950)
chr2 (105-167)||(23465794-23465856)
chr2 (110-167)||(18694432-18694489)
chr2 (69-157)||(34557300-34557388)
chr2 (49-135)||(10633377-10633463)
[»] chr7 (9 HSPs)
chr7 (68-169)||(101252-101353)
chr7 (68-169)||(31726604-31726705)
chr7 (105-169)||(16780812-16780876)
chr7 (130-169)||(21346448-21346487)
chr7 (68-149)||(25690738-25690819)
chr7 (68-173)||(30357816-30357921)
chr7 (68-144)||(35851951-35852027)
chr7 (103-149)||(11687825-11687871)
chr7 (105-167)||(34953924-34953986)
[»] chr5 (7 HSPs)
chr5 (68-169)||(35943499-35943600)
chr5 (15-166)||(23311726-23311878)
chr5 (13-169)||(18398524-18398680)
chr5 (105-169)||(18398611-18398675)
chr5 (103-155)||(2978440-2978492)
chr5 (105-169)||(43101155-43101219)
chr5 (113-168)||(896133-896188)
[»] chr4 (2 HSPs)
chr4 (105-169)||(43115563-43115627)
chr4 (69-167)||(40423278-40423376)


Alignment Details
Target: chr3 (Bit Score: 608; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 25 - 828
Target Start/End: Complemental strand, 50670202 - 50669407
Alignment:
Q  25 ttctcgttcggtattttttagcgcgagttaacccacaatgaatctttt-aagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatc 123  Q
    ||||||||||||||||||||| ||||||||||||||  |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  50670202 ttctcgttcggtattttttagtgcgagttaacccacgctgaaactttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtgtc 50670103  T
Q  124 agcgtaagttaactcacgctgaaaaatgtcgagctggagttaactcgagttaagaaaatgaataatttcaaaaggaagaagaacaattttcttgaaatag 223  Q
    |||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  50670102 agcgtaagttaactcacgctgaaaaatgtcgagctgaagtt---------taagaaaatgaataattttaaacggaagaataacaattttcttgaaatag 50670012  T
Q  224 aaatagagagaatagcaactcattatcaatatcataccttgagccaatagggaacattgcttttgtaaccggttgccaagatgatgccatcaaaattctc 323  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50670011 aaatagatagaatagcaactcattatcaatatcataccttgagccaatagggaacattgcttttgtaaccggttgccaagatgatgccatcaaaattctc 50669912  T
Q  324 cgaccttccatctacgaattccactgtttgacgttttaaccgttttatgcttggccgtacctacacaccaataaccaatcgatatttaggnnnnnnnn-c 422  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |         |    
T  50669911 tgaccttccatctacgaattccactgtttgacgttttaaccgttttatgcttggccgtacctacacaccaataaccaatcgatatttacgtttttttttc 50669812  T
Q  423 atgacacatcaatcaaaaaatt-agtttgacaaccctaacaatctaatctaatgaagataataatgggaaatcccaccaagcatgattcaaataatgatt 521  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669811 atgacacatcaatcaaaaattttagtttgacaaccctaacaatctaatctaatgaagataataatgggaaatcccaccaagcatgattcaaataatgatt 50669712  T
Q  522 aaccaannnnnnnnnnngttgattagctttggaattaaaataatcaaaattaaccaattgtgctttcgtccatgatttgattgaaatcacataatgatga 621  Q
    ||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669711 aaccaattttttttt--gttgattagctttggaattaaaataatcaaaattaaccaattgtgctttcgtccatgatttgattgaaatcacataatgatga 50669614  T
Q  622 aaaatcttgccaagaaaaaataaagaggtgggaacaaattaagaagccatttcatttcattaattaaatatataaaaggagagagatagagaaggaaatg 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50669613 aaaatcttgccaagaaaaaataaagaggtgggaacaaattaagaagccatttcatttcattaattaaatatataaaaagagagagatagagaaggaaatg 50669514  T
Q  722 taagttgcacttgatgtataaagcaaaaaggaaataattaggttccaccattagtttcttatttatnnnnnnnttgaacaccatcgagaaaatattacaa 821  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||    
T  50669513 taagttgcacttgatgtataaagcaaaaaggaaataattaggttccaccattagtttcttatttataaaaaaattgaacaccatcgagaaaatattataa 50669414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 581147 - 581034
Alignment:
Q  37 attttttagcgcgagttaacccacaatgaatcttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaac 136  Q
    ||||||||||| |||||||| |||| || | ||||||||| |  |||||| | |||||| ||  ||||||||||| ||||||||| |||||| |||||||    
T  581147 attttttagcgtgagttaactcacactgca-cttttaagacccgttcaataactttttaagtctgttcaaccgatcttaaaagtaccagcgtgagttaac 581049  T
Q  137 tcacgctgaaaaatg 151  Q
    |||| |||| |||||    
T  581048 tcacactgataaatg 581034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 37059044 - 37058943
Alignment:
Q  69 ttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctg-aaaaatgtcgagctggagttaac 167  Q
    ||||||||||||||||||||||||||| ||   |||||||||| |||||||| |  |||| ||||||||  ||||| |||||| ||||||  ||||||||    
T  37059044 ttttaagatcgattcaatcattttttaagtcgattcaaccgatcttaaaagtgtttgcgttagttaacttccgctgaaaaaatatcgagcgtgagttaac 37058945  T
Q  168 tc 169  Q
    ||    
T  37058944 tc 37058943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 12767390 - 12767307
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatg 151  Q
    |||||||||||| |||||||| |||||| ||  | ||||||||| ||| |||| |||||||  ||||| |||||||||||||||    
T  12767390 cttttaagatcgtttcaatcactttttaagtcggatcaaccgatcttagaagtgtcagcgtgggttaattcacgctgaaaaatg 12767307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 34273193 - 34273042
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    |||||||||||| |||||||| | |||| ||  |||||||||||||||||||| ||||||| |||||| ||||||||||||||| ||||| | |||||||    
T  34273193 cttttaagatcggttcaatcactgtttaagtcggttcaaccgattttaaaagtgtcagcgtgagttaattcacgctgaaaaatgccgagcagaagttaac 34273094  T
Q  168 tc-----gagttaagaaaatgaataatttcaaaaggaagaagaacaattttc 214  Q
    ||     |||||||| ||||||  ||||| |||||| |||||| ||||||||    
T  34273093 tcacgctgagttaaggaaatgagcaattttaaaagggagaagagcaattttc 34273042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 10340211 - 10340324
Alignment:
Q  38 ttttttagcgcgagttaacccacaatgaatcttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaact 137  Q
    ||||| |||| |||||||| |||| |||  ||||| |||||||||||||||||||||| ||  | ||  ||||| |||||||| ||||||| ||||||||    
T  10340211 tttttcagcgtgagttaactcacactgacactttttagatcgattcaatcattttttaagttgggtcggccgatcttaaaagtgtcagcgtgagttaact 10340310  T
Q  138 cacgctgaaaaatg 151  Q
    |||| |||||||||    
T  10340311 cacgttgaaaaatg 10340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 38924420 - 38924572
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    |||||||||||| |||||||| |||||| ||  ||||||| ||| ||||||||  |||||| ||||||||  |||||||||||| ||||  |||||||||    
T  38924420 cttttaagatcggttcaatcactttttaagtcggttcaactgatcttaaaagtgacagcgtgagttaacttccgctgaaaaatgccgagtgggagttaac 38924519  T
Q  168 tc-----gagttaagaaaatgaataatttcaaaaggaagaagaacaattttct 215  Q
    ||     |||||||| |||||| |||||| ||| || |||||| | |||||||    
T  38924520 tcatgctgagttaagcaaatgagtaattttaaatgggagaagagccattttct 38924572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 559976 - 560056
Alignment:
Q  69 ttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaa 149  Q
    |||||||| ||||||||| |||||||| ||  |||||||||||||||||| |  |||||| |||||||||||| |||||||    
T  559976 ttttaagaccgattcaattattttttaagttggttcaaccgattttaaaattgccagcgtgagttaactcacgttgaaaaa 560056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 21150238 - 21150292
Alignment:
Q  102 ttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgag 156  Q
    |||||||||| |||||||| |||||||||||||||||||| |||||||| |||||    
T  21150238 ttcaaccgatcttaaaagtgtcagcgtaagttaactcacgttgaaaaatatcgag 21150292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 29204625 - 29204707
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaat 150  Q
    ||||||| |||| |||||||| |||||| ||  | ||||| ||| ||||||||  ||||||||||||||| ||||||||||||    
T  29204625 cttttaaaatcggttcaatcactttttaagtcggatcaactgatcttaaaagtgacagcgtaagttaacttacgctgaaaaat 29204707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 37616348 - 37616274
Alignment:
Q  81 ttcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcga 155  Q
    ||||||||| ||||| ||  | |||||| || |||||||| ||||||| ||||||| ||||||||||||||||||    
T  37616348 ttcaatcatcttttaagttggatcaaccaatcttaaaagtgtcagcgtgagttaacccacgctgaaaaatgtcga 37616274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 32729436 - 32729526
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagtt-aactcacgctgaaaaatgtcgagc 157  Q
    |||||||||||  |||||| |||||||| ||  ||||||||||| |||||||| ||||||  |||| ||||  || |||||||||||||||    
T  32729436 cttttaagatcagttcaattattttttaagtcggttcaaccgatcttaaaagtgtcagcgacagttaaactgccgttgaaaaatgtcgagc 32729526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 9030610 - 9030711
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    ||||||||||||||||||||| ||||||  |  ||||||  ||| |||||||| |  |||| | |||||||||| |||||||||  ||||  ||||||||    
T  9030610 cttttaagatcgattcaatcactttttaaatcggttcaattgatcttaaaagtgtgcgcgtgaattaactcacgttgaaaaatgctgagcctgagttaac 9030709  T
Q  168 tc 169  Q
    ||    
T  9030710 tc 9030711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 188202 - 188103
Alignment:
Q  70 tttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaactc 169  Q
    |||||||||| | |||||||||||||     ||||||| |||||||||||| ||||||| ||||||||  ||||||||| || |||||||||||||||||    
T  188202 tttaagatcggtccaatcattttttaaacctgttcaacggattttaaaagtgtcagcgtgagttaacttccgctgaaaactgccgagctggagttaactc 188103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 34123236 - 34123137
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    ||||||| ||| | ||||||| |||||| |   |||||||||||||||||||| ||||||| ||||||||  ||||||||||||||||||  ||||||||    
T  34123236 cttttaatatcaactcaatcactttttaagctggttcaaccgattttaaaagtgtcagcgtgagttaacttccgctgaaaaatgtcgagcgtgagttaac 34123137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 25484967 - 25485069
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    ||||||||||| ||||||||| |||||| |  | ||||| |||| ||||||||  |||||| ||||||||||||||| |||||||||| |  ||||||||    
T  25484967 cttttaagatcaattcaatcactttttaagccaattcaaacgatcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcgaacgtgagttaac 25485066  T
Q  168 tcg 170  Q
    |||    
T  25485067 tcg 25485069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 34062683 - 34062619
Alignment:
Q  105 aaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaactc 169  Q
    |||||||||||||||| ||||||| |||| |||||||||||||||||| ||||  ||||||||||    
T  34062683 aaccgattttaaaagtgtcagcgtgagttcactcacgctgaaaaatgttgagcgtgagttaactc 34062619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 39126968 - 39127021
Alignment:
Q  113 ttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaa 166  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||  |||||||    
T  39126968 ttaaaagtgtcagcgtgagttaactcacgctgaaaaatgtcgagcgtgagttaa 39127021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 31847436 - 31847380
Alignment:
Q  101 gttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagc 157  Q
    |||| |||||| |||||||| ||||||  ||||||||||||||||||||||||||||    
T  31847436 gttcgaccgatcttaaaagtgtcagcgagagttaactcacgctgaaaaatgtcgagc 31847380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 258 - 385
Target Start/End: Original strand, 885200 - 885327
Alignment:
Q  258 taccttgagccaatagggaacattgcttttgtaaccggttgccaagatgatgccatcaaaattctccgaccttccatctacgaattccactgtttgacgt 357  Q
    |||||| | ||||||||| ||||| ||||||||||| |||||||  || ||| | ||||||||||| |  ||||||||  | ||||||||||| |  |||    
T  885200 tacctttaaccaatagggtacattacttttgtaaccagttgccagtattatggcgtcaaaattctctgtacttccatcagcaaattccactgtgtagcgt 885299  T
Q  358 tttaaccgttttatgcttggccgtacct 385  Q
    |||||||  ||||||| ||| |||||||    
T  885300 tttaacctctttatgcctggacgtacct 885327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 32191198 - 32191123
Alignment:
Q  81 ttcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgag 156  Q
    ||||||||||||||| ||  ||||||||||| ||||||||  |||||| ||||||   ||||||||||||||||||    
T  32191198 ttcaatcattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaatctacgctgaaaaatgtcgag 32191123  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 39902293 - 39902374
Alignment:
Q  69 ttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatg 151  Q
    |||||| |||| |||||||||||||||||  ||||||||||||  ||||||| || |||| | |||||||||||| |||||||    
T  39902293 ttttaaaatcggttcaatcattttttacgccagttcaaccgatcctaaaagt-tccgcgtgatttaactcacgctaaaaaatg 39902374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 32191216 - 32191304
Alignment:
Q  129 aagttaactcacgctgaaaaatgtcgagctggagttaactc-----gagttaagaaaatgaataatttcaaaaggaagaagaacaattt 212  Q
    ||||||||||||||||||||||||||| |  ||||||||||     ||||||||| ||||| |||||| || ||| |||||| ||||||    
T  32191216 aagttaactcacgctgaaaaatgtcgaacgagagttaactcatgctgagttaagagaatgagtaattttaagagggagaagagcaattt 32191304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 8041143 - 8041224
Alignment:
Q  69 ttttaagatcgattcaatcattttttacgtaagttcaaccg-attttaaaagtatcagcgtaagttaactcacgctgaaaaa 149  Q
    ||||||||||| |||||||| |||||| ||  ||||||||| || |||||||| | ||||| |||||| |||| ||||||||    
T  8041143 ttttaagatcggttcaatcaatttttaagttggttcaaccgaatcttaaaagttttagcgtgagttaattcacactgaaaaa 8041224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 16238841 - 16238906
Alignment:
Q  103 tcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaact 168  Q
    |||||| || |||||||| ||||| | ||||||||  ||||||||||||||||||  |||||||||    
T  16238841 tcaaccaatcttaaaagtctcagcatgagttaactaccgctgaaaaatgtcgagcccgagttaact 16238906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 24603123 - 24603023
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    |||||||||||| |||| | |||||||| |   ||||||||||| |||||||| | | | | |||||||||||| ||||||||||||||   ||||||||    
T  24603123 cttttaagatcggttcactaattttttaagctggttcaaccgatcttaaaagtgttatcatgagttaactcacg-tgaaaaatgtcgagtgtgagttaac 24603025  T
Q  168 tc 169  Q
    ||    
T  24603024 tc 24603023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 34062669 - 34062758
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagc 157  Q
    ||||||| |||| |||||||| |||||| ||   |||||| |||||||||| ||||||  | |||||||||||| | |||||||| ||||    
T  34062669 cttttaaaatcggttcaatcactttttaagtcgtttcaactgattttaaaaatatcagtttgagttaactcacgataaaaaatgttgagc 34062758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 33710612 - 33710562
Alignment:
Q  105 aaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcga 155  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  33710612 aaccgatcttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcga 33710562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 21488868 - 21488950
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaat 150  Q
    |||||||||||| ||||||||||||||| || |||||||||||| |||||||| |||||  || || |||  |||||||||||    
T  21488868 cttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaagtgtcagcaaaaattcactgtcgctgaaaaat 21488950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 23465794 - 23465856
Alignment:
Q  105 aaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    ||||||| |||||||| ||| |||||||||||| ||||||||||||| |||||  ||||||||    
T  23465794 aaccgatcttaaaagtgtcatcgtaagttaacttacgctgaaaaatgccgagcatgagttaac 23465856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 18694489 - 18694432
Alignment:
Q  110 attttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    ||||||||||| || |||| |||||||||||||||||||||||| |||  ||||||||    
T  18694489 attttaaaagtgtctgcgtgagttaactcacgctgaaaaatgtccagcatgagttaac 18694432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 34557388 - 34557300
Alignment:
Q  69 ttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagc 157  Q
    ||||||||||  |||||||||||||||  |  |||||| |||| ||||||||    | || ||||||||||||||||||||||||||||    
T  34557388 ttttaagatctgttcaatcattttttaaatcggttcaatcgatcttaaaagtgctggtgtgagttaactcacgctgaaaaatgtcgagc 34557300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 10633377 - 10633463
Alignment:
Q  49 gagttaacccacaatgaatcttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaa 135  Q
    |||||||| |||| |||  |||| | ||| |||||||||| |||||| ||   |||||||||| |||||||||||||||||| ||||    
T  10633377 gagttaactcacagtgatcctttgaggattgattcaatcaatttttaagtcgtttcaaccgatcttaaaagtatcagcgtaaattaa 10633463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 101353 - 101252
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    ||||| |||||  |||||||| |||||| || || ||||||||| |||||||| ||||||| ||||||||  |||||||||||| |||||  ||||||||    
T  101353 ctttttagatcagttcaatcactttttaagtcaggtcaaccgatcttaaaagtgtcagcgtgagttaactaccgctgaaaaatgccgagcatgagttaac 101254  T
Q  168 tc 169  Q
    ||    
T  101253 tc 101252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 31726705 - 31726604
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    |||||||| ||| ||||||||| ||||| |   ||||||||||| |||||||||||||| | |||| |||||||||||||||||  ||||  ||||||||    
T  31726705 cttttaagttcggttcaatcatattttaagccggttcaaccgatcttaaaagtatcagcatgagttcactcacgctgaaaaatgctgagcatgagttaac 31726606  T
Q  168 tc 169  Q
    ||    
T  31726605 tc 31726604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 16780812 - 16780876
Alignment:
Q  105 aaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaactc 169  Q
    ||||||| ||||||||  | ||||||||||||||| |||||||||||||||||  ||||||||||    
T  16780812 aaccgatcttaaaagtgcccgcgtaagttaactcatgctgaaaaatgtcgagcatgagttaactc 16780876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 21346487 - 21346448
Alignment:
Q  130 agttaactcacgctgaaaaatgtcgagctggagttaactc 169  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  21346487 agttaactcacgctgaaaaatgtcgagcgggagttaactc 21346448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 25690738 - 25690819
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaa 149  Q
    ||||| |||||| |||||||| |||||| |   ||||||||||| |||||||| ||||| | | ||||||||||||||||||    
T  25690738 ctttttagatcggttcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattaactcacgctgaaaaa 25690819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 30357921 - 30357816
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    ||||| |||| |||||| ||| |||||| || || ||||| ||| |||||| |||||  || ||||||||  ||||||||||||||||||  ||||||||    
T  30357921 ctttttagattgattcactcactttttatgtcaggtcaactgatcttaaaaatatcaatgtgagttaactaccgctgaaaaatgtcgagcgtgagttaac 30357822  T
Q  168 tcgagt 173  Q
    | ||||    
T  30357821 ttgagt 30357816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 35852027 - 35851951
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctg 144  Q
    |||||||||||| |||||||| ||| || ||  ||||||||||| |||||||| |||| || |||||| ||||||||    
T  35852027 cttttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaagtgtcagtgtgagttaattcacgctg 35851951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 11687825 - 11687871
Alignment:
Q  103 tcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaa 149  Q
    ||||||||| ||||||||  |||||| ||||||||||||||||||||    
T  11687825 tcaaccgatcttaaaagtgacagcgtgagttaactcacgctgaaaaa 11687871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 34953924 - 34953986
Alignment:
Q  105 aaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    ||||||| |||||||| ||||||| ||||||||  ||||||||||||| ||||  ||||||||    
T  34953924 aaccgatcttaaaagtgtcagcgtgagttaactaccgctgaaaaatgttgagcgtgagttaac 34953986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 35943600 - 35943499
Alignment:
Q  68 cttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    |||||||||||| |||||| |||||||| || ||||||||||||||||| | | ||||| | |||||||||| | ||||||  |||||||  ||||||||    
T  35943600 cttttaagatcggttcaattattttttaagtcagttcaaccgattttaagaatgtcagcatgagttaactcaagttgaaaagcgtcgagcgtgagttaac 35943501  T
Q  168 tc 169  Q
    ||    
T  35943500 tc 35943499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 23311726 - 23311878
Alignment:
Q  15 catgagttaattctcgttcggtatttttt-agcgcgagttaacccacaatgaatcttttaagatcgattcaatcattttttacgtaagttcaaccgattt 113  Q
    ||||||||| |||  |||||||||||||| |||| |||||||| |||  ||    ||||||||||| || ||| |||||||| || ||||||||| || |    
T  23311726 catgagttacttcatgttcggtatttttttagcgtgagttaactcacgttggtatttttaagatcggttaaattattttttaagtcagttcaaccaatct 23311825  T
Q  114 taaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaa 166  Q
    ||||||| ||| ||| |||||||| ||| | |||||| ||||||| |||||||    
T  23311826 taaaagtgtcaacgtgagttaacttacgttaaaaaatatcgagcttgagttaa 23311878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 18398680 - 18398524
Alignment:
Q  13 agcatgagttaattctcgttcggtattttttagcgcgagttaacccacaatgaatcttttaagatcgattcaatcattttttacgtaagttcaaccgatt 112  Q
    |||||||||||| || || ||| ||||||| | || ||||||||  ||| |||  |||||||||||| |||| ||| ||||||     |||||||||||     
T  18398680 agcatgagttaactcacgctcgatatttttcaacgtgagttaacttacactgacacttttaagatcggttcattcactttttaaaccggttcaaccgatc 18398581  T
Q  113 ttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaactc 169  Q
    ||| || | ||||||| ||||||||||  |||||||||| |||||  ||||||||||    
T  18398580 ttataattttcagcgtgagttaactcagactgaaaaatgccgagcgtgagttaactc 18398524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 18398611 - 18398675
Alignment:
Q  105 aaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaactc 169  Q
    ||||||| |||||||| |||| ||||||||||||||| |||||||| ||||||  ||||||||||    
T  18398611 aaccgatcttaaaagtgtcagtgtaagttaactcacgttgaaaaatatcgagcgtgagttaactc 18398675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 2978492 - 2978440
Alignment:
Q  103 tcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcga 155  Q
    |||| ||||||||||||| ||||||| |||| |||||| ||||||||||||||    
T  2978492 tcaatcgattttaaaagtgtcagcgtgagttgactcacactgaaaaatgtcga 2978440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 43101219 - 43101155
Alignment:
Q  105 aaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaactc 169  Q
    ||||||| ||||||||| | ||| |||||||| || |||||||||||||||||  ||||||||||    
T  43101219 aaccgatcttaaaagtaccggcgcaagttaacgcatgctgaaaaatgtcgagcgtgagttaactc 43101155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 896133 - 896188
Alignment:
Q  113 ttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaact 168  Q
    |||||||| | ||||| ||||||||||||| ||||||||||||||  |||||||||    
T  896133 ttaaaagtcttagcgtgagttaactcacgccgaaaaatgtcgagcgagagttaact 896188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 43115627 - 43115563
Alignment:
Q  105 aaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaactc 169  Q
    ||||||| |||||||| |||| || |||||||||||||||||||||||||| ||  |||||||||    
T  43115627 aaccgatcttaaaagtgtcagtgtgagttaactcacgctgaaaaatgtcgaacttaagttaactc 43115563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 40423376 - 40423278
Alignment:
Q  69 ttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtatcagcgtaagttaactcacgctgaaaaatgtcgagctggagttaac 167  Q
    ||||||||||| |||||||| |||||| ||  |||||||  || |||||||| ||||| | ||||||||  || ||||||||||| |||  ||||||||    
T  40423376 ttttaagatcggttcaatcactttttaagtcggttcaacaaatcttaaaagtgtcagcatgagttaacttccgttgaaaaatgtcaagcgtgagttaac 40423278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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