View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5307_high_3 (Length: 331)

Name: NF5307_high_3
Description: NF5307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5307_high_3
NF5307_high_3
[»] chr1 (2 HSPs)
chr1 (16-323)||(36386506-36386803)
chr1 (17-99)||(20148353-20148434)
[»] chr8 (1 HSPs)
chr8 (17-308)||(26161791-26162088)
[»] chr5 (1 HSPs)
chr5 (33-243)||(28201397-28201606)
[»] chr7 (1 HSPs)
chr7 (24-183)||(1322611-1322767)
[»] scaffold0054 (2 HSPs)
scaffold0054 (91-161)||(31681-31751)
scaffold0054 (191-308)||(31370-31486)
[»] chr3 (1 HSPs)
chr3 (67-127)||(27759145-27759205)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 36386506 - 36386803
Alignment:
Q  16 atttaactgccactaaggcacacaaaaatgcatatgcatgcatgacgatatatgcaatcccgccacttaaggcaaacacaatcaaatattaataaccatc 115  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||||| ||  |||||||||          ||||||||||||||||||||||||||||||    
T  36386506 atttaaccgccacttaggcacacagaaatgcatatgcatgcatgaccatggatgcaatcc----------ggcaaacacaatcaaatattaataaccatc 36386595  T
Q  116 atgcacatgacccaaaaatcaatcttttcgtaaaactcacatttccttgattttctttcttcctttaaatttatcagatatcaaccatttctttctcaaa 215  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36386596 atgcacatgacccaaaaatcaatcttttcataaaactcacatttccttgattttctttcttcctttaaatttatcagatatcaaacatttctttctcaaa 36386695  T
Q  216 caccgcaaaacatatcaaacataatacagtcacaatcctcttcacataaatcagtccacatatcagcttcttacataaatatcatataaaacaaaattaa 315  Q
    |||| ||||||||||||||||||||||| |||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  36386696 caccacaaaacatatcaaacataatacaatcacaatcatcttcatataaatcattccacatatcagcttcatacataaatatcatataaaacataattaa 36386795  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 20148353 - 20148434
Alignment:
Q  17 tttaactgccactaaggcacacaaaaatgcatatgcatgcatgacgatatatgcaatcccgccacttaaggcaaacacaatca 99  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||||||||  ||||||||| ||||||| ||| |||||||||||    
T  20148353 tttaactgccactaaggcacacagaaacgcatatgcatgaatgacgatgaatgcaatccagccactt-aggtaaacacaatca 20148434  T

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Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 26162088 - 26161791
Alignment:
Q  17 tttaactgccactaaggcacacaaaaatgcatatgcatgcatgacgatatatgcaatcccgccacttaaggcaaacacaatcaaatattaataaccatca 116  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26162088 tttaaccgccactaaggcacacagaaatgtatatgcatgcatgacgatgaatgcaatcccgccactta-ggcaaacacaatcaaatattaataaccatca 26161990  T
Q  117 t-gcacatgacccaaaaatcaatcttttcgtaaaactcacatttccttgattttctttcttcctttaaatttatcagatatcaaccatttctttctcaaa 215  Q
    | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||   ||||||| |||||||||||||||    
T  26161989 ttgcacatgacccaaaaaccaatcttttcataaaactcacatttccttgattttctttctttctttaaatttat---atatcaaacatttctttctcaaa 26161893  T
Q  216 caccgca---------aaacatatcaaacataatacagtcacaatcctcttcacataaatcagtccacatatcagcttcttacataaatatcatataaaa 306  Q
    ||||  |         |||||||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||    
T  26161892 caccaaaaaacatcagaaacatatcagacatgatacaatcacaatcctcttcacataaatcattccacatatcagcttcatgcataaatatcatataaaa 26161793  T

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Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 33 - 243
Target Start/End: Complemental strand, 28201606 - 28201397
Alignment:
Q  33 gcacacaaaaatgcatatg-catgcatgacgatatatgcaatcccgccacttaaggcaaacacaatcaaatattaataaccatcatgcacatgacccaaa 131  Q
    |||||||||||||||| || |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||||||||    
T  28201606 gcacacaaaaatgcatttgacatgcatgacgatggatgcaatcccaccactta-ggcaaacacaatcaaatattaatattcatcatgcacatgacccaaa 28201508  T
Q  132 aatcaatcttttcgtaaaactcacatttccttgattttctttcttcctttaaatttatcagatatcaaccatttctttctcaaacaccgcaaaacatatc 231  Q
    || |||||||||| |||||||| ||||| | | |||||||||||| ||||  ||| |||| | ||| | ||||||||||||||||| | ||| ||||||     
T  28201507 aaccaatcttttcataaaactcgcattttcattattttctttctttcttt-gattcatcaaaaatctaacatttctttctcaaacatcacaacacatata 28201409  T
Q  232 aaacataataca 243  Q
    | ||||| ||||    
T  28201408 agacatagtaca 28201397  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 1322611 - 1322767
Alignment:
Q  24 gccactaaggcacacaaaaatgcatatgc-atgcatgacgatatatgcaatcccgccacttaaggcaaacacaatcaaatattaataaccatcatgcaca 122  Q
    ||||||||||||||||||| ||||||||  ||| ||||| ||  |||||||||  ||||| ||  ||||||||||||| ||||||||| |||||||||||    
T  1322611 gccactaaggcacacaaaa-tgcatatgatatgaatgac-atgaatgcaatccaaccactaaaa-caaacacaatcaattattaataatcatcatgcaca 1322707  T
Q  123 tgacccaaaaatcaatcttttcgtaaaactcacatttccttgattttctttcttcctttaa 183  Q
    |||||| |||| |||||||||| |||||||||  ||||| | |||||||||||| ||||||    
T  1322708 tgaccc-aaaaccaatcttttcataaaactcatttttccattattttctttctttctttaa 1322767  T

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Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 31751 - 31681
Alignment:
Q  91 acacaatcaaatattaataaccatcatgcacatgacccaaaaatcaatcttttcgtaaaactcacatttcc 161  Q
    ||||| |||| |||||||||  ||||| ||||| |||||||||||||||||||| ||||||||| ||||||    
T  31751 acacagtcaactattaataatgatcatacacataacccaaaaatcaatcttttcataaaactcatatttcc 31681  T

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Target: scaffold0054; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 308
Target Start/End: Complemental strand, 31486 - 31370
Alignment:
Q  191 agatatcaaccatttctttctcaaacaccgcaaaacatatcaaacataatacagtcacaatcctcttcacataaatcagtccacatatcagcttcttaca 290  Q
    ||||||||| |||||||||| ||| || | |||| ||||  | |||||||||| |||||||  ||||||||||||||| || || |  ||||||  ||||    
T  31486 agatatcaaacatttctttcacaatcatcacaaa-catacaatacataatacaatcacaattatcttcacataaatcattcgacgtcgcagctttataca 31388  T
Q  291 taaatatcatataaaaca 308  Q
    |||||||| |||||||||    
T  31387 taaatatcctataaaaca 31370  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 27759205 - 27759145
Alignment:
Q  67 atgcaatcccgccacttaaggcaaacacaatcaaatattaataaccatcatgcacatgacc 127  Q
    |||||||||| |||||| || |||||||||||||||| |||||| |||| |||||||||||    
T  27759205 atgcaatcccaccactttagacaaacacaatcaaatactaataatcatcgtgcacatgacc 27759145  T

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