View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5307_high_4 (Length: 289)
Name: NF5307_high_4
Description: NF5307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5307_high_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 103 - 289
Target Start/End: Complemental strand, 50670698 - 50670512
Alignment:
| Q |
103 |
tctgttactcagccaagatcaaatatcaatgataatgatcatttgttttcaatgatcaatcccttttcttttgtgtctatcacctggccaaaattatcaa |
202 |
Q |
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| T |
50670698 |
tctgttactcagccaagatcaaatatcaatgataatgatcatttgttttcaatgatcaatcccttttcttttgtgtctatcacctggccaaaattatcaa |
50670599 |
T |
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| Q |
203 |
ttttatgtggcaaaattgagggagcaattaaaaattgctctttatataattatttatgatccatgctttgcttcagcttctaaacac |
289 |
Q |
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| T |
50670598 |
ttttatgtggcaaaattgagggagcaattaaaaattgctctttatataattatttatgatccatactttgcttcagattctaaacac |
50670512 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 50670794 - 50670731
Alignment:
| Q |
7 |
tccaagaatatctcattttccattcatttatataccaaacctacctcaattcaatatattcctc |
70 |
Q |
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| T |
50670794 |
tccaaaaatatctcattttccattcatttatataccaaacctacctcaattcaatatattcctc |
50670731 |
T |
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