View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5307_low_1 (Length: 440)

Name: NF5307_low_1
Description: NF5307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5307_low_1
NF5307_low_1
[»] chr3 (41 HSPs)
chr3 (10-427)||(10034883-10035295)
chr3 (10-427)||(9980346-9980758)
chr3 (10-427)||(10263581-10263993)
chr3 (10-343)||(10430898-10431230)
chr3 (10-386)||(10520365-10520736)
chr3 (10-427)||(10129802-10130207)
chr3 (10-386)||(9841738-9842109)
chr3 (85-386)||(9852832-9853128)
chr3 (10-328)||(11772114-11772429)
chr3 (10-328)||(11778856-11779171)
chr3 (10-343)||(10360658-10360990)
chr3 (92-339)||(10666497-10666742)
chr3 (92-378)||(10583544-10583829)
chr3 (10-183)||(10583393-10583566)
chr3 (145-343)||(10372768-10372965)
chr3 (10-307)||(10192976-10193272)
chr3 (10-307)||(10086056-10086352)
chr3 (85-341)||(10531736-10531989)
chr3 (145-339)||(10503666-10503857)
chr3 (85-281)||(10091950-10092146)
chr3 (85-281)||(10198832-10199028)
chr3 (10-132)||(10503462-10503584)
chr3 (85-282)||(10680534-10680731)
chr3 (10-137)||(9852619-9852746)
chr3 (8-126)||(10091666-10091784)
chr3 (8-126)||(10198548-10198666)
chr3 (366-427)||(10430725-10430786)
chr3 (10-125)||(10372916-10373031)
chr3 (11-183)||(10666347-10666519)
chr3 (75-170)||(10091871-10091966)
chr3 (75-170)||(10198753-10198848)
chr3 (10-79)||(13852563-13852632)
chr3 (13-62)||(10531664-10531713)
chr3 (245-292)||(8585531-8585578)
chr3 (85-123)||(10091812-10091850)
chr3 (85-123)||(10198694-10198732)
chr3 (20-62)||(10680469-10680511)
chr3 (24-58)||(10892212-10892246)
chr3 (24-58)||(11128158-11128192)
chr3 (24-58)||(11157149-11157183)
chr3 (22-58)||(8864190-8864226)
[»] scaffold0083 (1 HSPs)
scaffold0083 (10-427)||(54379-54791)
[»] chr4 (1 HSPs)
chr4 (11-307)||(17849815-17850111)
[»] chr2 (1 HSPs)
chr2 (10-291)||(26909768-26910049)
[»] chr8 (3 HSPs)
chr8 (10-307)||(44954552-44954849)
chr8 (10-137)||(11487909-11488036)
chr8 (145-195)||(11488114-11488164)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 427
Target Start/End: Original strand, 10034883 - 10035295
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10034883 atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaaactctctgtttttggaattgtcatcaacttgagacattgccagaaaactgcc 10034982  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    |||||||||||||||||| ||||  ||||||| | ||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||   |||||     
T  10034983 tcccttcctcgctgaaatcacttagattgtgggattgtaaaaagcttgagtcattaccagaagacagcctcactgactctcttagggaactctgcatttg 10035082  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatca 309  Q
     |  || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| | ||||||||||||| |    
T  10035083 gaattgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatagatataaatcatgaagtcacaatatga 10035182  T
Q  310 tgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttca 409  Q
    | || ||||||||||||||  ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  10035183 t-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttca 10035277  T
Q  410 tatcatctcatgggtcct 427  Q
    ||||||||||||||||||    
T  10035278 tatcatctcatgggtcct 10035295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 10 - 427
Target Start/End: Original strand, 9980346 - 9980758
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  9980346 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaagtctctgttttttgttttgtcaacaacttgagacattgccagaaaactgcc 9980445  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    |||||||||||||||||| |||| |||| |   | ||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||   |||       
T  9980446 tcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaactgtacatcga 9980545  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatca 309  Q
    | | || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || |||||||||||| |    
T  9980546 tggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatga 9980645  T
Q  310 tgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttca 409  Q
    | || ||||||||||||||  ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  9980646 t-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttca 9980740  T
Q  410 tatcatctcatgggtcct 427  Q
    ||||||||||||||||||    
T  9980741 tatcatctcatgggtcct 9980758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 10 - 427
Target Start/End: Original strand, 10263581 - 10263993
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  10263581 atgaagtcctttgatggaaatgggcttcaacacctctcctctctccaatatctctgttttttcttttgtcatcaacttgagacattgccagaaaactgcc 10263680  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    |||||||||||||||||| ||||| ||||     |||||||||||| |||||||||||||||||||||||||||  ||||||||| | ||| |  ||       
T  10263681 tcccttcctcgctgaaatcacttctattgcttggatgtgaaaagctagagtcattaccagaagacagcctcccttcctctcttaaactactcgctatcga 10263780  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatca 309  Q
        || |||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||||   |||||||| ||||||||||||| |    
T  10263781 gttttgcccattgttagaagaaaggtataaaaggaaggaacattagtccaaaattgctcacatccctttcataagaataaatgatgaagtcacaatatga 10263880  T
Q  310 tgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttca 409  Q
    | ||| |||||||||||||  ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  10263881 t-aga-caagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttca 10263975  T
Q  410 tatcatctcatgggtcct 427  Q
    ||||||||||||||||||    
T  10263976 tatcatctcatgggtcct 10263993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 10431230 - 10430898
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  10431230 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaactctctgtttttggttttgtgatcaacttgagacattgccagaaaactgcc 10431131  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||      
T  10431130 tcccttcctcgctgaaatcacttgatttgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactgagaattag 10431031  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatca 309  Q
       |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |    
T  10431030 ggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagatataaatgatgaagtcacaatatga 10430931  T
Q  310 tgagaacaagttgtgttccag-tttcaggtatgtt 343  Q
    | || |||||||||||||||| |||||||||||||    
T  10430930 t-ag-acaagttgtgttccagttttcaggtatgtt 10430898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 10520365 - 10520736
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| ||  |||| |||||||| ||||| | ||||||||||||||||||||||||||||    
T  10520365 atgaagtcctttgatggaaaagggcttcgtcacctctcctctctccaacgtctccgtttttgggattgtgaacaacttgagacattgccagaaaactgcc 10520464  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||  |||  ||||||     
T  10520465 tcccttcctcgctgaaattacttgatttgtggaaatgtgaaaagcttaaatcattaccagaagacagcctccctgactctctgaagagactgctcatttg 10520564  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatca 309  Q
       |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||  |||||| || |||||||||||| |    
T  10520565 ggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatcccagtcatatcaataaattaccaagtcacaatatga 10520664  T
Q  310 tgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 386  Q
    | || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  10520665 t-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 10520736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 10 - 427
Target Start/End: Original strand, 10129802 - 10130207
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  10129802 atgaagtcctttgatggaaatgggcttcgacacctcttctctctccaacatctcttcttttggaattgtcatcaacttgagacattgccagaaaactgcc 10129901  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    |||||||||||||||||| |||| | || ||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||   ||||      
T  10129902 tcccttcctcgctgaaatcacttgacttttgggattgtgaaaagctagagtcattaccagaagacagcctccctgattctcttatgcaactgtgcattca 10130001  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatca 309  Q
      ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||| | ||||      | ||| |||||||| |    
T  10130002 aggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctttcaaaaatat------caaaggcacaatatga 10130095  T
Q  310 tgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttca 409  Q
    | || ||||||||||||||  ||||||||||| |||  |||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||    
T  10130096 t-ag-acaagttgtgttcccatttcaggtatgctcc-tagttcctaccagaaa---gccaataatcaatcctctgtacgacacacctcttaatattttca 10130189  T
Q  410 tatcatctcatgggtcct 427  Q
    ||||||||||||||||||    
T  10130190 tatcatctcatgggtcct 10130207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 9841738 - 9842109
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||  ||||| || |||||  || |||||| ||||||||||||||||||    
T  9841738 atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaatatctcgatttttcgttttgtccacagcttgagtcattgccagaaaactgcc 9841837  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    |||||||||||||||||| ||||  |||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||   |||||     
T  9841838 tcccttcctcgctgaaatcacttatattgtttcaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttgagcgtctgaacatttg 9841937  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatca 309  Q
      ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||  |||||  || |||||| ||||| |    
T  9841938 gggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctgtcatatggataaaccaccaagtcagaatatga 9842037  T
Q  310 tgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 386  Q
    | || |||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  9842038 t-ag-acaagttgtgttcccgtttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 9842109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 85 - 386
Target Start/End: Original strand, 9852832 - 9853128
Alignment:
Q  85 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 184  Q
    |||||| |||| ||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9852832 cttgagtcattaccagaaaactgcctcccatcatcgctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctg 9852931  T
Q  185 actctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatata 284  Q
    |||| || |||  ||| | ||||| | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  9852932 actcactgaagagactggacatttatggatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcataga 9853031  T
Q  285 tataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctg 384  Q
     ||||||||| | || ||||||| || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||| ||||    
T  9853032 aataaatgaccaggttacaatatgat-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctg 9853126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 11772114 - 11772429
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||||| ||||||| || || ||| ||||||||||||||||||    
T  11772114 atgaagtcttttgatggaaatgggcttcgacacctctcctctctccaatatctctatttttggaattgtcaacagctcgagtcattgccagaaaactgcc 11772213  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    ||||||||||| |||||| ||||  |||    |  |||||  |||||||||||||||| |||||||||||||| |||||||||||||||||   |||||     
T  11772214 tcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttg 11772313  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatca 309  Q
      |||| |||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||  ||||||||||   |    
T  11772314 gggatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacatccctgtcatagatataaatgaaaaagtcacaat---a 11772410  T
Q  310 tgagaacaagttgtgttcc 328  Q
    |||||||||| ||||||||    
T  11772411 tgagaacaagctgtgttcc 11772429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 11779171 - 11778856
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| || || ||| ||||||||||||||||||    
T  11779171 atgaagtccttcgatggaaatgggcttcgacacctctcctctctcgaatatctctatttttggaattgtcaacagctcgagtcattgccagaaaactgcc 11779072  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    ||||||||||| |||||| ||||  |||    |  |||||  |||||||||||||||| |||||||||||||| |||||||||||||||||   |||||     
T  11779071 tcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttg 11778972  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatca 309  Q
      |||| |||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | ||||||||  ||||||||||   |    
T  11778971 gggatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacatccctgtcatagaaataaatgaaaaagtcacaat---a 11778875  T
Q  310 tgagaacaagttgtgttcc 328  Q
    |||||||||| ||||||||    
T  11778874 tgagaacaagctgtgttcc 11778856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 10360990 - 10360658
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctc-tgtttttggtattgtcatcaacttgagacattgccagaaaactgc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||| | || |||  || |||||| |||| ||||||||||||    
T  10360990 atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctcgtattttttgaat-gtcgacagcttgagtcattaccagaaaactgc 10360892  T
Q  109 ctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 208  Q
    ||||||||||||||||||| ||||  ||| |     |||||||||||| | |||||||||||||||||||||||||||||||||||| |||| | ||| |    
T  10360891 ctcccttcctcgctgaaatcacttacattttatggttgtgaaaagcttaaatcattaccagaagacagcctccctgactctcttaaggaactggacatct 10360792  T
Q  209 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 308  Q
     |   || |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |||||| | ||||| ||| ||||||||||||     
T  10360791 atgattgcccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccccgtcataaaaataaacgaccaagtcacaatatg 10360692  T
Q  309 atgagaacaagttgtgttccag-tttcaggtatgtt 343  Q
    || || |||||||||||||| | |||||||||||||    
T  10360691 at-ag-acaagttgtgttcccgttttcaggtatgtt 10360658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 92 - 339
Target Start/End: Original strand, 10666497 - 10666742
Alignment:
Q  92 cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctct 191  Q
    |||| |||||| || ||||||||||||||||||||| |||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10666497 cattaccagaagacagcctcccttcctcgctgaaatcacttgaattgtttgaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctct 10666596  T
Q  192 taagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat 291  Q
    |||| ||||   ||||     |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||    
T  10666597 taaggaactgcacattgaggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaat 10666696  T
Q  292 gacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggta 339  Q
     || |||||||||||| || || || ||||||||||| ||||||||||    
T  10666697 tacaaagtcacaatatgat-ag-acgagttgtgttcctgtttcaggta 10666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 92 - 378
Target Start/End: Original strand, 10583544 - 10583829
Alignment:
Q  92 cattgccagaaaactgcctcccttcctcgctgaaattacttcaatt-gtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctc 190  Q
    |||| |||||| || ||||||||||||||||||||| ||||||||| ||||   |||| ||  || ||||||||||||||||||||||||||||||||||    
T  10583544 cattaccagaagacagcctcccttcctcgctgaaatcacttcaatttgtgggt-tgtgtaagactcgagtcattaccagaagacagcctccctgactctc 10583642  T
Q  191 ttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaa 290  Q
    || ||| |||   |||       || |||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||||||||| | |||||    
T  10583643 ttgagcgactgaccatccaattttgcccattgttagaagaaaggtataaaaggaatgaatattggtccaaaattgctcacatccctgtcatacaaataaa 10583742  T
Q  291 tgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgttccacagttcctaccagaaaactgccaataatcaat 378  Q
    | || |||||||||||| || || |||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10583743 tcacaaagtcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgttccacatttcctaccagaaaactgccaataatcaat 10583829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 10583393 - 10583566
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||    |||||||||||||||||||||||||||||||||||    
T  10583393 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaatatctctgttttttcatttgtcatcaacttgagacattgccagaaaactgcc 10583492  T
Q  110 tcccttcctcgctgaaattac-ttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 183  Q
    |||||||||| ||||||| || |||| || ||| | ||||||||||||| |||||||||||||||||||||||||    
T  10583493 tcccttcctcactgaaatcactttcatttatgg-attgtgaaaagcttgggtcattaccagaagacagcctccct 10583566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 145 - 343
Target Start/End: Complemental strand, 10372965 - 10372768
Alignment:
Q  145 tgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaagga 244  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| |||  ||| |||||| |  |||| |||||||||| |||||||||||||||||    
T  10372965 tgtgaaaagcttgagtcattaccagaagacagcctcccttcctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaagga 10372866  T
Q  245 aggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt 343  Q
    ||||||| ||||||||||||||||||||||| |||||| | ||||| ||| || ||||||||| || || |||||||||||||| | |||||||||||||    
T  10372865 aggaacattggtccaaaattgctcacatccccgtcataaaaataaacgaccaaatcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgtt 10372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 10192976 - 10193272
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||| |||    ||| |  ||||||| ||||||||| |||| || ||||| |||     
T  10192976 atgaagtcctttgatggaaatgggcttcaacacctctcctttctcgaaa-tcttcactttcgtaattgtcaacaacttgagccatttcctgaaaattgcg 10193074  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    | |||||||||||||||| |||| || | ||||  |||||||  ||||| |||||||| |||||| |||||||||| ||||| ||||  |||  |||  |    
T  10193075 ttccttcctcgctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctgattctctgaagcgtctaagcatcgt 10193174  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 307  Q
        |  || ||||||  |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| |||||||||    
T  10193175 atttttccctttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat 10193272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 10086056 - 10086352
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||| |||    ||| |  ||||||| ||||||||| |||| || ||||| |||     
T  10086056 atgaagtcctttgatggaaatgggcttcaacacctctcctttctcgaaa-tcttcactttcgtaattgtcaacaacttgagccatttcctgaaaattgcg 10086154  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    | |||||||||||||||| |||| || | ||||  |||||||  ||||| |||||||| |||||| |||||||||| ||||| ||||  ||   |||  |    
T  10086155 ttccttcctcgctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctgattctctgaagcgtctgagcatcgt 10086254  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 307  Q
        |  || ||||||  |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| |||||||||    
T  10086255 atttttccctttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat 10086352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 341
Target Start/End: Original strand, 10531736 - 10531989
Alignment:
Q  85 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 184  Q
    |||||| ||||||||||||| |||||||||||||||||||| | ||||||||| | ||  |||| ||  ||||||||||||||||||||||||||||||     
T  10531736 cttgagtcattgccagaaaattgcctcccttcctcgctgaagtcacttcaattttcgagttgtgtaagacttgagtcattaccagaagacagcctccctt 10531835  T
Q  185 actctcttaagcaactagtca-tttttag--atgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 281  Q
     ||||||||   ||||| ||| | |  ||   || |||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  10531836 cctctctta---aactactcactatcgagttttgcccattgttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcat 10531932  T
Q  282 atatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggtatg 341  Q
    |   |||||  |  |||| |||||   ||||  |||||||||||||| ||||||||||||    
T  10531933 aataataaacaagcaagttacaat---atgaagacaagttgtgttcccgtttcaggtatg 10531989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 145 - 339
Target Start/End: Original strand, 10503666 - 10503857
Alignment:
Q  145 tgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaagga 244  Q
    |||||||||||| | |||||||||||||||||||| ||||| |||||||||| |||  |||||   ||||| |||   |||| |||||||||||||||||    
T  10503666 tgtgaaaagctttactcattaccagaagacagccttcctgattctcttaagctactgatcattcaaagatgcccaacattagaagaaaggtataaaagga 10503765  T
Q  245 aggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggta 339  Q
    ||||||| |||||||||||| ||||||||||||||||| | ||| |||   ||||||||||   ||||| ||| | |||||||| ||||||||||    
T  10503766 aggaacattggtccaaaatttctcacatccctgtcatagaaatagatggacaagtcacaat---atgaggacaggctgtgttcccgtttcaggta 10503857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 85 - 281
Target Start/End: Original strand, 10091950 - 10092146
Alignment:
Q  85 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 184  Q
    |||||| |||| ||||| ||||||||||| ||||||||||||| ||||  |||| |  | ||| ||| |||||| ||||||||||||||||||||||||     
T  10091950 cttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctccctt 10092049  T
Q  185 actctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 281  Q
      |||||||     ||   |||| |  |||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  10092050 catctcttatcactctgtacattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10092146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 85 - 281
Target Start/End: Original strand, 10198832 - 10199028
Alignment:
Q  85 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 184  Q
    |||||| |||| ||||| ||||||||||| ||||||||||||| ||||  |||| |  | ||| ||| |||||| ||||||||||||||||||||||||     
T  10198832 cttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctccctt 10198931  T
Q  185 actctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 281  Q
      |||||||     ||   |||| |  |||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  10198932 catctcttatcactctgtacattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10199028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 10503462 - 10503584
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggt-attgtcatcaacttgagacattgccagaaaactgc 108  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||  |||  | ||||||  || |||||| |||||||||||||||||    
T  10503462 atgaagtcctttgatggaaatgggcttcgacaaatctcctctctcgaaaatct-tgaatttcttaattgtctacagcttgagtcattgccagaaaactgc 10503560  T
Q  109 ctcccttcctcgctgaaattactt 132  Q
    ||||||||||||||||||||||||    
T  10503561 ctcccttcctcgctgaaattactt 10503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 282
Target Start/End: Original strand, 10680534 - 10680731
Alignment:
Q  85 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 184  Q
    |||||| |||| |||||||| |||||||||||||||||||||| ||||||||| | ||  |||| ||  |||||||  |||||||||||||||||||||     
T  10680534 cttgagtcatttccagaaaattgcctcccttcctcgctgaaatcacttcaatttttgagttgtgtaagacttgagttgttaccagaagacagcctccctt 10680633  T
Q  185 actctcttaagcaactagtcattttta---gatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 281  Q
     ||||||||   ||||| ||| | | |     || |||||||||| |||||||||||||||||| |||||  ||||||||||| ||||||||||||||||    
T  10680634 cctctctta---aactactcactatcaagttttgcccattgttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcat 10680730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 9852619 - 9852746
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| || |||||| ||||  |  |||||| || |||| | |||||||||||||||||     
T  9852619 atgaagtcctttgatggaaatgggcttcgacacctcttctctctccaatatctctattttgcgggttgtcaacagcttgggtcattgccagaaaactgct 9852718  T
Q  110 tcccttcctcgctgaaattacttcaatt 137  Q
    |||||||||| ||||||| |||| ||||    
T  9852719 tcccttcctcactgaaatcacttaaatt 9852746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 10091666 - 10091784
Alignment:
Q  8 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||  ||| ||  | ||||  || ||| || ||||||||||||||||    
T  10091666 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacgtctcgatttctgtcaatgtcgacagcttcagtcattgccagaaaactg 10091765  T
Q  108 cctcccttcctcgctgaaa 126  Q
    |||||||||||||||||||    
T  10091766 cctcccttcctcgctgaaa 10091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 10198548 - 10198666
Alignment:
Q  8 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||  ||| ||  | ||||  || ||| || ||||||||||||||||    
T  10198548 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacgtctcgatttctgtcaatgtcgacagcttcagtcattgccagaaaactg 10198647  T
Q  108 cctcccttcctcgctgaaa 126  Q
    |||||||||||||||||||    
T  10198648 cctcccttcctcgctgaaa 10198666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 10430786 - 10430725
Alignment:
Q  366 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcct 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10430786 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcct 10430725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 10373031 - 10372916
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||   ||||| |  | |||||| |||| |||||| || |||    
T  10373031 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcaaaaatctctatttttttaattgtgaaaagcttgagtcattaccagaagacagcc 10372932  T
Q  110 tcccttcctcgctgaa 125  Q
    |||||||||| |||||    
T  10372931 tcccttcctctctgaa 10372916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 10666347 - 10666519
Alignment:
Q  11 tgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttg-gtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||  ||| ||  |||| ||||||||| || || ||| |||| |||||||||| ||    
T  10666347 tgaagtcctttaatggaaatgggcttctacacctctcctctctcaaacgtct-tgaatttgagtattgtcaacagctggagtcattaccagaaaactacc 10666445  T
Q  110 tcccttcctcgctgaaattactt-caatt-gtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 183  Q
    ||||||| || ||||||  |||| ||||| |||  | ||| |  ||||| ||||||||||||||||||||||||||    
T  10666446 tcccttcatctctgaaagaacttacaattcgtg--attgtaagcagcttaagtcattaccagaagacagcctccct 10666519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 10091871 - 10091966
Alignment:
Q  75 ttgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccaga 170  Q
    |||| |||| || ||| |||| |||||||||||||||||||  |||||||||| ||||| |||   ||| |||||||||||||||||||| |||||    
T  10091871 ttgtaatcatctggagtcattaccagaaaactgcctccctttgtcgctgaaatcacttcgatttgcgaattgtgaaaagcttgagtcatttccaga 10091966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 10198753 - 10198848
Alignment:
Q  75 ttgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccaga 170  Q
    |||| |||| || ||| |||| |||||||||||||||||||  |||||||||| ||||| |||   ||| |||||||||||||||||||| |||||    
T  10198753 ttgtaatcatctggagtcattaccagaaaactgcctccctttgtcgctgaaatcacttcgatttgcgaattgtgaaaagcttgagtcatttccaga 10198848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 13852632 - 13852563
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtc 79  Q
    |||||||| || |||||||||||||||||||| |||||||||||| | |||||| | |||||| ||||||    
T  13852632 atgaagtctttcgatggaaatgggcttcgacatctctcctctctcaacaatctcggattttggaattgtc 13852563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 10531664 - 10531713
Alignment:
Q  13 aagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatct 62  Q
    ||||| ||||| |||||||| ||||||||||||||||||||| |||||||    
T  10531664 aagtcatttgaaggaaatggacttcgacacctctcctctctcaaaaatct 10531713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 8585578 - 8585531
Alignment:
Q  245 aggaacagtggtccaaaattgctcacatccctgtcatatatataaatg 292  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||||    
T  8585578 aggaacattggtccaacattgctcacatacctgtcataaatataaatg 8585531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 10091812 - 10091850
Alignment:
Q  85 cttgagacattgccagaaaactgcctcccttcctcgctg 123  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10091812 cttgagtcattgccagaaaactgtctcccttcctcgctg 10091850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 10198694 - 10198732
Alignment:
Q  85 cttgagacattgccagaaaactgcctcccttcctcgctg 123  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10198694 cttgagtcattgccagaaaactgtctcccttcctcgctg 10198732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 10680469 - 10680511
Alignment:
Q  20 ttgatggaaatgggcttcgacacctctcctctctcgaaaatct 62  Q
    |||| |||||||| ||||||||||||||||||||| |||||||    
T  10680469 ttgaaggaaatggacttcgacacctctcctctctcaaaaatct 10680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 10892212 - 10892246
Alignment:
Q  24 tggaaatgggcttcgacacctctcctctctcgaaa 58  Q
    |||||||||||||||||||||||||||||| ||||    
T  10892212 tggaaatgggcttcgacacctctcctctctggaaa 10892246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 11128192 - 11128158
Alignment:
Q  24 tggaaatgggcttcgacacctctcctctctcgaaa 58  Q
    |||||||||||||||||||||||||||||| ||||    
T  11128192 tggaaatgggcttcgacacctctcctctcttgaaa 11128158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 11157183 - 11157149
Alignment:
Q  24 tggaaatgggcttcgacacctctcctctctcgaaa 58  Q
    |||||||||||||||||||||||||||||| ||||    
T  11157183 tggaaatgggcttcgacacctctcctctctggaaa 11157149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 8864190 - 8864226
Alignment:
Q  22 gatggaaatgggcttcgacacctctcctctctcgaaa 58  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  8864190 gatggaaatgggcttcgatacctctcctctctggaaa 8864226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 54791 - 54379
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  54791 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaagtctctgttttttgttttgtcaacaacttgagacattgccagaaaactgcc 54692  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    |||||||||||||||||| |||| |||| |   | ||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||   |||       
T  54691 tcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaactgtacatcga 54592  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatca 309  Q
    | | || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || |||||||||||| |    
T  54591 tggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatga 54492  T
Q  310 tgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttca 409  Q
    | || ||||||||||||||  ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  54491 t-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttca 54397  T
Q  410 tatcatctcatgggtcct 427  Q
    ||||||||||||||||||    
T  54396 tatcatctcatgggtcct 54379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 17850111 - 17849815
Alignment:
Q  11 tgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtat-tgtcatcaacttgagacattgccagaaaactgcc 109  Q
    |||| ||||||||||||||||| |||||||| || |||||||| |||| ||| ||  |||  ||  ||||| ||||||||| |||||||| |||||||||    
T  17850111 tgaactcctttgatggaaatggacttcgacatctttcctctcttgaaagtct-tgactttcttaactgtcaacaacttgagtcattgccacaaaactgcc 17850013  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    |||||||||| |||||||  ||| |||| ||  | ||| |||  |||||||| |||||||||||||||||||||  ||||||||||| ||| |||||||     
T  17850012 tcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttg 17849913  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 307  Q
      |||| ||  | |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| | ||  | ||| ||||||||||||    
T  17849912 gcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaattgaggaccaagtcacaatat 17849815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 26909768 - 26910049
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||    |||    ||||| | |||||  || |||| |||||||||||||    
T  26909768 atgaagtcctttgatggaaatgggcttcgacgcctctcctctctccaaaatcttcactttattaattgtgaacaactcaagtcatttccagaaaactgcc 26909867  T
Q  110 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttt 209  Q
    ||||||||||||||||||  |||||||| |     ||||| || ||||||||||||||||||||||||||||| ||||||||| ||   || |  || |     
T  26909868 tcccttcctcgctgaaatatcttcaattttatggctgtgagaaacttgagtcattaccagaagacagcctccccgactctcttgagatgctggaaatgtc 26909967  T
Q  210 tagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat 291  Q
        || |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  26909968 atcttgcccattgttagaagaaaggtacaaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaat 26910049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 44954849 - 44954552
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacct-ctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgc 108  Q
    |||||||||||| | ||||||||||||| |||||| |||||||||||||||||||   ||| |  | ||||| || |||||| |||| |||||||||||     
T  44954849 atgaagtcctttcaaggaaatgggcttcaacacctactcctctctcgaaaatctccactttcgtaactgtcaacagcttgagtcatttccagaaaactgt 44954750  T
Q  109 ctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 208  Q
    || |||||||||||||||| ||||||||| | |   |||||| | |||||||| ||||||||||| ||||||||  |||||||||| | ||| |||||||    
T  44954749 cttccttcctcgctgaaatcacttcaatttttgttttgtgaaga-cttgagtcgttaccagaagaaagcctccccaactctcttaatcgactggtcattt 44954651  T
Q  209 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 307  Q
       |||| ||  | | || ||||||||||| |||||||||||| ||||||||||||||| | || | ||||||| | ||| ||| | ||||||||||||    
T  44954650 ggcgatgccctgtatcagaagaaaggtatagaaggaaggaacattggtccaaaattgctaaaattcatgtcatagaaatagatggccaagtcacaatat 44954552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 11487909 - 11488036
Alignment:
Q  10 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 109  Q
    |||||| ||| |||||||| |||||||||| |||||||||||||| || |||| |  ||||||| | || | ||  ||||| |||| |||||||||| ||    
T  11487909 atgaagccctatgatggaagtgggcttcgatacctctcctctctcaaagatctttcattttggtgtagtgaacactttgagtcattaccagaaaacttcc 11488008  T
Q  110 tcccttcctcgctgaaattacttcaatt 137  Q
    |||| |||||||||| || |||| ||||    
T  11488009 tcccatcctcgctgatatcacttaaatt 11488036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 11488114 - 11488164
Alignment:
Q  145 tgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaag 195  Q
    ||||||||||||| ||||||||||| ||| | |||||||||||||||||||    
T  11488114 tgtgaaaagcttgggtcattaccagtagaaaacctccctgactctcttaag 11488164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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