View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5307_low_2 (Length: 376)
Name: NF5307_low_2
Description: NF5307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5307_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 50670529 - 50670201
Alignment:
| Q |
1 |
gcttcagcttctaaacacagttcaatgtcatcagctattctcttggcatccaaagaggcaccttgcagtcccctttttgtaaaacctacggcatagagtc |
100 |
Q |
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| T |
50670529 |
gcttcagattctaaacacagttcaatgtcatcagctattctcttggcatccaaagaggcaccttgcagtcccctttttgtaaaacctacggcatagagtc |
50670430 |
T |
|
| Q |
101 |
catttttacctttccacccacttggaaatggcttcataggaaatccatcttccttagagaacatatcctcttcctgcatatattatataatttatttagc |
200 |
Q |
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| T |
50670429 |
catttttacctttccacccacttggaaatggcttcataggaaatccatcttccttagagaacatatcctcttcctgcatatattatataatttatttagc |
50670330 |
T |
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| Q |
201 |
acacataaataactaaattattaatccatcatttaattattgtactattttaacatt-ttttaagtgcacgtcgccaaacatctttctatttcaaattgt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50670329 |
acacataaataactaaattattaatccatcatttaattattgtactattttaacatttttttaagtgcacgtcgccaaacatctttctatttcaaattgt |
50670230 |
T |
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| Q |
300 |
aaccaaattaaaatagggaaattgtgctt |
328 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
50670229 |
aaccaaattaaaatagggaaattgtgctt |
50670201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 884472 - 884554
Alignment:
| Q |
82 |
aaacctacggcatagagtccatttttacctttccacccacttggaaatggcttcataggaaatccatcttccttagagaacat |
164 |
Q |
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| T |
884472 |
aaaccaacagcatagaggccattttcacctttccatccattagggaatggcttcctagggtatccatcttccttagagaacat |
884554 |
T |
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