View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5307_low_8 (Length: 245)
Name: NF5307_low_8
Description: NF5307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5307_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 43389312 - 43389100
Alignment:
| Q |
15 |
aatatgtgagagaaaacaaaataaatcaagagagccatagagaaaaaggtaaaaagaatgaatgaatgttgtaggattcaaccttgatgaaactagactt |
114 |
Q |
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| T |
43389312 |
aatatgtgagagaaaacaaaataaatcaagagagccatagagaaaaaggtaaaaagaatgaatgaatgttgtaggattcaaccttgatgaaactagactt |
43389213 |
T |
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| Q |
115 |
aagtcctaaaaaactatgaataacattttaatatgaattagctttttagttttcccataatgtataaaatattaaatggggtccgggcgttggatatttg |
214 |
Q |
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| T |
43389212 |
aagtcctaaaaaactatgaataacattttaatatgaattagctttttagttttcccataatgtataaaatattaaatggggtccgggcgttggatatttg |
43389113 |
T |
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| Q |
215 |
tgaatccatatta |
227 |
Q |
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||||||||||||| |
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| T |
43389112 |
tgaatccatatta |
43389100 |
T |
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