View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5308-Insertion-1 (Length: 599)
Name: NF5308-Insertion-1
Description: NF5308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5308-Insertion-1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 210 - 586
Target Start/End: Original strand, 48748070 - 48748447
Alignment:
| Q |
210 |
tataatctattatcatttttctagtcaaggaaaaaa-tgctcatcttatcttatactaaatatacaggtcttattattttatttgtaaacctatataaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48748070 |
tataatctattatcatttttctagtcaaggaaaaaaatgctcatcttatcttatactaaatatacaggtcttattattttatttgtaaacctatataaga |
48748169 |
T |
|
| Q |
309 |
caaaatagcaataaataaatttattttgtcnnnnnnntatacaaatttaatttacaatcatctaattttccccgcatctcactccttttgctcaaacact |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48748170 |
caaaatagcaataaataaatttattttgtcaaaaaaatatacaaatttaatttacaatcatctaattttccccgcatctcactccttttgctcaaacact |
48748269 |
T |
|
| Q |
409 |
attaggaccagattccaaaatgaaaaactcaaaaccgtgtcacaactcacaacttgtacaacaatttttagattctttggaaattgaaatagtgctcacc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48748270 |
attaggaccagattccaaaatgaaaaactcaaaaccgtgtcacaactcacaacttgtacaacaatttttagattctttggaaattgaaatagtgctcacc |
48748369 |
T |
|
| Q |
509 |
gaaatcctacctaacaaagaaaggggtaccctaatgtactgcccttagccccttaccctccaagcttgtttattacac |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48748370 |
gaaatcctacctaacaaagaaaggggtaccctaatgtactgcccttagccccttaccctccaagcttgtttattacac |
48748447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 48747195 - 48747399
Alignment:
| Q |
8 |
catataatttggtatttccctacaaattccccccaaacttttgcctgggttgcatcatttatcgacgtggctcctaaccgtcgtcatagtcaaaacgact |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
48747195 |
catataatttggtatttccctacaaattccccccaaacttttgcctgggttgcatcatttatcgatgtggctcccaaccgtcgtcatagtcaaaacgact |
48747294 |
T |
|
| Q |
108 |
ttaattaaattaaaaacgcaatagttcaagagacaaaaatataattaaagaattaaagatagagtaaaatatatgatttgataaaatacatttgccattt |
207 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48747295 |
ttaattaaattaaaaatgcgatagttcaaaagacaaaaatataattaaagatttaaaaatagagtaaaatatatgatttgat-aaatacatttgccattt |
48747393 |
T |
|
| Q |
208 |
catata |
213 |
Q |
| |
|
|||||| |
|
|
| T |
48747394 |
catata |
48747399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University