View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5308-Insertion-2 (Length: 442)
Name: NF5308-Insertion-2
Description: NF5308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5308-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 1940708 - 1940383
Alignment:
| Q |
8 |
caaacttgcataaattaagaaatcaaaactaacaagttaatattaaaacttgtgcattttatattaaatacatagttttgcaatgacccgtaatgagacg |
107 |
Q |
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| T |
1940708 |
caaacttgcataaattaagaaatcaaaactaacaagttaatattaaaacttgtgcattttatattaaatacatagttttgcaatgacccgtaatgagacg |
1940609 |
T |
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| Q |
108 |
tatatatgaagtaataacgacagtgaagatcaccgcatgtgttcttaccaattggcgcgcatgcctccaagcaaagtgtcagttttaagaagctccacag |
207 |
Q |
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| T |
1940608 |
tatat--gaagtaataacgacagtgaaaatcactgcatgtgttcttaccaattggcgcgcatgcctccaagcaaagtgtcagttttaagaagctccacag |
1940511 |
T |
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| Q |
208 |
tccaatctatggtgtgaatctttgctatcacagctgaagttaccagtctagcatagcgataaagatcttcatcttccaagtctgggtattccttctaata |
307 |
Q |
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| T |
1940510 |
tccaatctatggtgtgaatctttgctatcacagctgaagttaccagtctagcatagcgataaagatcttcatcttccaagtctgggtattccttctaata |
1940411 |
T |
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| Q |
308 |
gagtacaattatcaaatatatatgttag |
335 |
Q |
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| T |
1940410 |
gagtacaattatcaaatatatatgttag |
1940383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 148 - 316
Target Start/End: Complemental strand, 1926460 - 1926293
Alignment:
| Q |
148 |
gttcttaccaattggcgcgcatgcctccaagcaaagtgtcagttttaagaagctccacagtccaatctatggtgtgaatctttgctatcacagctgaagt |
247 |
Q |
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| T |
1926460 |
gttcataccaattagcacgcatgccagcaagcaaagtgtcagttttaaggagctccacagtccaatctatggtgtgaatctttgcaataacagctgaagt |
1926361 |
T |
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| Q |
248 |
taccagtctagcatagcgataaagatcttcatcttccaagtctgggtattccttctaatagagtacaat |
316 |
Q |
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| T |
1926360 |
caccaatctagcatgacgataaagatcttcatcttccaaatacgggtattctttctaata-agtacaat |
1926293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 150 - 313
Target Start/End: Complemental strand, 1955212 - 1955049
Alignment:
| Q |
150 |
tcttaccaattggcgcgcatgcctccaagcaaagtgtcagttttaagaagctccacagtccaatctatggtgtgaatctttgctatcacagctgaagtta |
249 |
Q |
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| T |
1955212 |
tcttaccaattagcacgcatgccagcaagcaaagtgtcggttttaaggagctccacagtccaatctatggtgtgaatctttgcaataactgctgaagtca |
1955113 |
T |
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| Q |
250 |
ccagtctagcatagcgataaagatcttcatcttccaagtctgggtattccttctaatagagtac |
313 |
Q |
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| T |
1955112 |
ccaatctagcatgacggtaaagatcttcatcttccaagtccgggtattcattctaataaagtac |
1955049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 1940322 - 1940278
Alignment:
| Q |
398 |
ccttaagagaatcacacacagcattgtgttctagaacaaaaaggg |
442 |
Q |
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| T |
1940322 |
ccttaagagaatcacacacagcattgtgttctagaacaaaaaggg |
1940278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 12947612 - 12947648
Alignment:
| Q |
50 |
ttaaaacttgtgcattttatattaaatacatagtttt |
86 |
Q |
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| T |
12947612 |
ttaaaacttgtgcattttatattaaataggtagtttt |
12947648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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