View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5308_high_9 (Length: 236)
Name: NF5308_high_9
Description: NF5308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5308_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 37623179 - 37623353
Alignment:
| Q |
56 |
aaaccgataaatttagattttggatttaaaggaaaaaac---ctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaa |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37623179 |
aaaccgataaatttagattttggatttaaaggaaaaaaaaatctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaa |
37623278 |
T |
|
| Q |
153 |
gatcatcacagcttagatcttgtaattttctcatcaaatacaatcatcactttccttatagctttcctatctctg |
227 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
37623279 |
gatcatcacatcttagatcttgtaattttctcatctaatacaatcatcactttccctatagctttcctatctctg |
37623353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 37621585 - 37621622
Alignment:
| Q |
17 |
ctatgctcttttataaatggcacagcagattcaatgaa |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
37621585 |
ctatgctcttttataaatggcacagcagattcaatgaa |
37621622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 55135671 - 55135841
Alignment:
| Q |
56 |
aaaccgataaatttagattttggatttaaaggaaaaaacctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagat |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
55135671 |
aaaccgataaatttagattttggatttaaag-aaaaaatctcacaatttggatatttaacttctcatgtttgagtgctcaagcatagttttagtaaagat |
55135769 |
T |
|
| Q |
156 |
catcacagcttagatcttgtaattttctcatcaaatacaatcatcactttccttatagctttcctatctctg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
55135770 |
catcacagcttagatcttgtaattttctcatcaaatacaatcatcactttccctatagctttcctatctctg |
55135841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 54410285 - 54410121
Alignment:
| Q |
62 |
ataaatttagattttggatttaaaggaaaaaacctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagatcatcac |
161 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54410285 |
ataaatttagattttggatttaaag-aaaaaatcacacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagatcatcac |
54410187 |
T |
|
| Q |
162 |
agcttagatcttgtaattttctcatcaaatacaatcatcactttccttatagctttcctatctctg |
227 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
54410186 |
aacttagatcttgtaattttctcatcaaatacaatcatcactttccctatagctttcctatctctg |
54410121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 32000299 - 32000472
Alignment:
| Q |
56 |
aaaccgataaatttagattttggatttaaaggaaaaaacctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaag-- |
153 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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|
| T |
32000299 |
aaacccataaatttcgattttggatttaaag-aaaaaatctcacaatttggatagtgaacctctcatgtttgagggctcaagcatagttttagttaagat |
32000397 |
T |
|
| Q |
154 |
-atcatcacagcttagatcttgtaattttctcatcaaatacaatcatcactttccttatagctttcctatctctg |
227 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| |
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|
| T |
32000398 |
catcatcatagcctagatcttgtaattttctcatcgaatacaatcatcacttttcccatagctttcctatctctg |
32000472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 42779622 - 42779716
Alignment:
| Q |
133 |
tcaagcatagttttagtaaagatcatcacagcttagatcttgtaattttctcatcaaatacaatcatcactttccttatagctttcctatctctg |
227 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
42779622 |
tcaagcatagttttagcaaagatcatcacagcttagatcttgtaattttctcatcgaatacaatcatcaccttccctatagctttcctatctctg |
42779716 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 519349 - 519179
Alignment:
| Q |
56 |
aaaccgataaatttagattttggatttaaaggaaaaaacctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagat |
155 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
519349 |
aaacccataaatttggattttggatttaaag-aaaaaatctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagat |
519251 |
T |
|
| Q |
156 |
catcacagcttagatcttgtaattttctcatcaaatacaatcatcactttccttatagctttcctatctctg |
227 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
519250 |
catcacaacttagatcttgtaattttctcatcaaatacaatcatcactttccctatagctttcctatctctg |
519179 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 27478182 - 27478345
Alignment:
| Q |
60 |
cgataaatttagattttggatttaaaggaaaaaacctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagatcatc |
159 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
27478182 |
cgataaatttagattttggatttaaag-aaaaaatctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatatttttagtaaagatcatc |
27478280 |
T |
|
| Q |
160 |
acagcttagatcttgtaattttctcatcaaatacaatcatcactttccttatagctttcctatct |
224 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
27478281 |
acaactttgatcttgtaattttctcatcaaatacaatcatcactttccctatagctttcctatct |
27478345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 56 - 227
Target Start/End: Original strand, 24459885 - 24460055
Alignment:
| Q |
56 |
aaaccgataaatttagattttggatttaaaggaaaaaacctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagat |
155 |
Q |
| |
|
||||| |||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24459885 |
aaacccataaatttggatttttgatttaaag-aaaaaatctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagat |
24459983 |
T |
|
| Q |
156 |
catcacagcttagatcttgtaattttctcatcaaatacaatcatcactttccttatagctttcctatctctg |
227 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
24459984 |
catcacaacttagatcttgtaattttctcatcgaatacaatcatcacttttcctatagctttcctatctctg |
24460055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 74 - 226
Target Start/End: Original strand, 10454883 - 10455034
Alignment:
| Q |
74 |
tttggatttaaaggaaaaaacctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagatcatcacagcttagatctt |
173 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10454883 |
tttggatttaaag-aaaaaatctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagatcatcacaacttagatctt |
10454981 |
T |
|
| Q |
174 |
gtaattttctcatcaaatacaatcatcactttccttatagctttcctatctct |
226 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
10454982 |
gtaattttctcatcgaatacaatcatcactttccctataattttcctatctct |
10455034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 21153539 - 21153364
Alignment:
| Q |
56 |
aaaccgataaatttagattttggatttaaaggaaaaaacctcacaatttggatagtgaacctctcatgt-----ttgagtgctcaagcatagttttagta |
150 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21153539 |
aaacctataaatttggattttggatttaaag-aaaaaatctcacaatttggattgtgaacctctcatgtcatgtttgagtgctcaagcatagttttagta |
21153441 |
T |
|
| Q |
151 |
aagatcatcacagcttagatcttgtaattttctcatcaaatacaatcatcactttccttatagctttcctatctctg |
227 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21153440 |
aagatcatcacaacttagatcttgtaattttctcatcgaatacaatcatcactttccctatagctttcctatctctg |
21153364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 6720467 - 6720298
Alignment:
| Q |
56 |
aaaccgataaatttagattttggatttaaaggaaaaaacctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagat |
155 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
6720467 |
aaacccataaattttgattttggatttaaag-aaaaaatctcacaatttggatag-gaacctctcttgtttaagtgctcaagcatagttttagtaaagat |
6720370 |
T |
|
| Q |
156 |
catcacagcttagatcttgtaattttctcatcaaatacaatcatcactttccttatagctttcctatctctg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6720369 |
catcacagcttagatcttgtaattttctcatcgaatacaatcatcactttccctatagctttcctatctctg |
6720298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 47649900 - 47650049
Alignment:
| Q |
74 |
tttggatttaaaggaaaaaacctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagatcatcacagcttagatctt |
173 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47649900 |
tttggatttaaag--aaaaatctcacaatttggattgtgaacctctcatgtttgagtgctcaagcatagttttagtaaagatcatcacaacttagatctt |
47649997 |
T |
|
| Q |
174 |
gtaattttctcatcaaatacaatcatcactttccttatagctttcctatctc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47649998 |
gtaattttctcatcaaatacaatcatcactttccctatagctttcctatctc |
47650049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 39069884 - 39069717
Alignment:
| Q |
56 |
aaaccgataaatttagattttggatttaaaggaaaaaacctcacaatttggatagtgaacctctcatgtttgagtgctcaagcatagttttagtaaagat |
155 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39069884 |
aaaccgataaatttggattttggatttaaag-aaaaaatctcacaatttggatagtaaacctctcatgtttgagtgctcaagcatagttttagtaaagat |
39069786 |
T |
|
| Q |
156 |
catcacagcttagatcttgtaattttctcatcaaatacaatcatcactttccttatagctttcctatct |
224 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||| || | ||||| | |||||||||||||| |
|
|
| T |
39069785 |
catcacaacttagatcttgtaattttctcatcgaatacaattattattttccctgtagctttcctatct |
39069717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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