View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5308_low_1 (Length: 718)
Name: NF5308_low_1
Description: NF5308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5308_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 17 - 708
Target Start/End: Complemental strand, 25796063 - 25795401
Alignment:
| Q |
17 |
acatttgactagtactgagtatccatcaaccaatgctaatgtgaaactccaaggtataaccaaacccatgattgtcaccaaatagctagcacatgaataa |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25796063 |
acatttgactagtactgagtatccatctaccaatgctaatgtgaaactccaaggtataaccaaacccatgattgtcaccaaatagctagcacatgaataa |
25795964 |
T |
|
| Q |
117 |
tgaacacacacaattagctacataattatagaaattcgacgaatttactaatgtgattgatctcaatctgctcatgcctcctttccttttatgttatgaa |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25795963 |
tgaacacacacaattagctacataattatagaaattcgacgaatttactaatgtgattgatctcaatctgctcatgcctcctttccttttatgttatgaa |
25795864 |
T |
|
| Q |
217 |
tttactaattcgacaaatttactacctatgaaacatggatactagacatacaatgtcactaacacgttgtcgacacgggtaataatttgagaaaataatt |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |
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| T |
25795863 |
tttacta-----------------cctatgaaacatggatactagaca--------------cacgttgtcgacatgggtaataatttgagaaaatgata |
25795795 |
T |
|
| Q |
317 |
tagttaaatgtaaatactat--gttagtgatgtgttagaaaccgaacacaatttcagtctaagttatctgtgctacataaattaagattatcatcataac |
414 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
25795794 |
tagttaaatgtaaatactatatgttagtggcgtgttagaaaccaaacacaatttcagtctgagttatatgtgctacataaattaagattatcatcataac |
25795695 |
T |
|
| Q |
415 |
aaagagaataacnnnnnnnnnnnnggtaccagaaagctgtgtagctgtagaattcaacccccaaagacataaaaagaagggaagcagatgaaaacaaggt |
514 |
Q |
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|||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| || |
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| T |
25795694 |
aaagagaatagcaaaaagataaaaggtaccagaaagctgtgtagctatagaattcaactcccaaagacataaagagaagggaagcagatgaaaacaaagt |
25795595 |
T |
|
| Q |
515 |
ttggcctaatctgagaatgaagctggcacttgtgcccacagagccaggtatttcattcatgtaacttattctataaggttctgaactatataacttaacc |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25795594 |
ctggcctaatctgagaatgaagctggcacttgtgcccacagagccaggtatttcattcatgtaacttattctataaggttctgaactatataacttaacc |
25795495 |
T |
|
| Q |
615 |
atacaagcttatttctttcagctgaagcttcttttggtaacacaaaaacatgacctataatatttaataacatctcacaatcacaacacctatg |
708 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25795494 |
atacaagcttatttctttcagctgaagcttcttttggtaacacaaaaacatgacctataatatttaataacatctcacaatcacaacacctatg |
25795401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 6252544 - 6252511
Alignment:
| Q |
296 |
taataatttgagaaaataatttagttaaatgtaa |
329 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |
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| T |
6252544 |
taataatttgagaaaataatttaattaaatgtaa |
6252511 |
T |
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