View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5308_low_2 (Length: 530)
Name: NF5308_low_2
Description: NF5308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5308_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 271
Target Start/End: Complemental strand, 1897839 - 1897589
Alignment:
| Q |
21 |
tgcgatagcggtaatttgcaggtggaggaagtcatgcgtgcggtctgaatgtccaagctgcccgtgcagattatgtgctaattaatgaggctaaaacgag |
120 |
Q |
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| T |
1897839 |
tgcgatagcagaaatttgcaggtggaggaagtcatgcgtgcggtctgaatgtccaggctgcccgtgaagattatgtgctaattaatgaggctaaaacgag |
1897740 |
T |
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| Q |
121 |
tgcagtaagcagaaatcgtgcaacaagccgagagggtcacgtctgaggaactacaacattgttctgatgctaggggaagtaaaatgtaatttggacgcaa |
220 |
Q |
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| T |
1897739 |
tgcagtaagcagaaatcgtgcaacaagccgagagggtcacgtctgaggaactacaacattgttctgatgctaggggaagtaaaatgtaatttgggcgcaa |
1897640 |
T |
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| Q |
221 |
caatcttcaaagataaaatctgtgttagagatgacaaagacaaattcatat |
271 |
Q |
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| T |
1897639 |
caatcttcaaagataaaatctgtgttagagatgacaaagacaaattcatat |
1897589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 354 - 523
Target Start/End: Complemental strand, 1897495 - 1897325
Alignment:
| Q |
354 |
tagttgttggatgacatagtgggtatcct-gtcttaagttagagtttgatgctattttatgtggttttaaaactgttattcgttcttttccaaactttac |
452 |
Q |
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| T |
1897495 |
tagttgttggatgacatagtgggtatcctagtcttaagttagagtttgatgctattttatgtggttttaaaactgttattcgttgttttccaaactttac |
1897396 |
T |
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| Q |
453 |
tataacttttatccgaaggcaagcaaacaatatgactcatttgtgaactagagtgacattgtcctatgcta |
523 |
Q |
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| T |
1897395 |
tataacttttatccgaaggcaagcaaacaatataactcatttgtgaactagagtgacattgtcctatgcta |
1897325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 1897540 - 1897496
Alignment:
| Q |
273 |
aagcatggggtttaatgcaagctcttctcttgcttatgaatttgg |
317 |
Q |
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| T |
1897540 |
aagcatggggtttaatgcaagctcttctcttgcttatgaatttgg |
1897496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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