View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5308_low_6 (Length: 301)

Name: NF5308_low_6
Description: NF5308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5308_low_6
NF5308_low_6
[»] chr3 (2 HSPs)
chr3 (18-293)||(25601607-25601882)
chr3 (20-256)||(25596839-25597075)
[»] chr1 (2 HSPs)
chr1 (22-228)||(42602798-42603004)
chr1 (97-231)||(28928442-28928576)
[»] chr4 (15 HSPs)
chr4 (84-217)||(36643618-36643751)
chr4 (84-230)||(55967007-55967153)
chr4 (87-199)||(36613342-36613454)
chr4 (87-231)||(38863134-38863278)
chr4 (105-199)||(35974003-35974097)
chr4 (70-154)||(18364242-18364326)
chr4 (107-219)||(35968285-35968397)
chr4 (70-154)||(36598599-36598683)
chr4 (84-231)||(18083021-18083168)
chr4 (84-231)||(36617513-36617660)
chr4 (87-157)||(3978136-3978206)
chr4 (105-231)||(18359158-18359284)
chr4 (105-231)||(36603644-36603770)
chr4 (160-230)||(36636999-36637069)
chr4 (18-46)||(36668520-36668548)
[»] chr6 (4 HSPs)
chr6 (105-230)||(33844280-33844405)
chr6 (105-230)||(33840288-33840413)
chr6 (125-231)||(7140746-7140852)
chr6 (125-231)||(8680360-8680466)
[»] chr7 (4 HSPs)
chr7 (105-169)||(32413648-32413712)
chr7 (92-157)||(6844163-6844228)
chr7 (126-211)||(14677153-14677238)
chr7 (105-157)||(44501441-44501493)
[»] chr5 (4 HSPs)
chr5 (22-198)||(19675096-19675272)
chr5 (22-198)||(19658257-19658433)
chr5 (125-211)||(17667110-17667196)
chr5 (112-169)||(25064275-25064332)
[»] chr8 (2 HSPs)
chr8 (89-198)||(35335844-35335953)
chr8 (97-169)||(27701888-27701960)
[»] chr2 (2 HSPs)
chr2 (114-160)||(43864058-43864104)
chr2 (97-158)||(43875208-43875269)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 25601882 - 25601607
Alignment:
Q  18 gagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttcc 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601882 gagctatcacgaagagtcaaaatcttagagacgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttcc 25601783  T
Q  118 aaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcact 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601782 aaagatacttccatcttgtggacaaaatgcaagtttgaacagcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcact 25601683  T
Q  218 caatctgtcttcatgctcgttctcagagtgtattgctttattcaaaaaatttataaaatcagacatgtcctttgtt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||    
T  25601682 caatctgtcttcatgctcgttctcagagtgtattgctttattcaaattttttataaaatcagacatgtcccttgtt 25601607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 25597075 - 25596839
Alignment:
Q  20 gctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaa 119  Q
    ||||||||||||||| ||||||||||| | | |||  | |||| |||  |||||||| ||||||  | ||||||||||||||||||||||| ||||||||    
T  25597075 gctatcacgaagagttaaaatcttagatacggatgaggtaaaattctccatagtggggaattcaaggcaatgcaatataagggtgggaatatgtttccaa 25596976  T
Q  120 agatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactca 219  Q
    |||| ||||||||| || |||||||||||||||||||||||||  ||||||||  ||||||||||||| ||||| ||||||  |||||||||||| ||||    
T  25596975 agattcttccatctcgtagacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaagaagaacattgtcgggtaaatcgctca 25596876  T
Q  220 atctgtcttcatgctcgttctcagagtgtattgcttt 256  Q
    |||||||||||| ||| || ||| |||||||||||||    
T  25596875 atctgtcttcattctcattttcacagtgtattgcttt 25596839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 42602798 - 42603004
Alignment:
Q  22 tatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaag 121  Q
    ||||||||||||||||||||||||| |  |||   | ||||  ||| | ||||||||| |  ||||||| ||||||||| || |||||||||||||| |     
T  42602798 tatcacgaagagtcaaaatcttagacacaaatatggaaaaatgcttcacagtgggaaagtttgaggaatccaatataagagtaggaatacgtttccacat 42602897  T
Q  122 atacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaat 221  Q
    |  |||||||||| ||||||| ||||||||||||||||  |||||||  |||  |||||||||||| ||||||| || |||||| ||||| |||||||      
T  42602898 aagcttccatcttttggacaagatgcaagtttgaacggtgtgtttggagttaagaaatgacaaaatgtgaaggataagacagtcaggtaagtcactcagc 42602997  T
Q  222 ctgtctt 228  Q
    |||||||    
T  42602998 ctgtctt 42603004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 28928442 - 28928576
Alignment:
Q  97 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggag 196  Q
    |||||||||||| ||| ||||| |||| ||||||||  ||||| |  |||||||||||||| || | |||||  ||  |||| || || || ||||| ||    
T  28928442 taagggtgggaagacgcttccagagattcttccatcgagtggagagtatgcaagtttgaacagcttctttggcttttaaaaaagataatatgtgaagtag 28928541  T
Q  197 aacacagtcgggtaaatcactcaatctgtcttcat 231  Q
    ||||||||| || |||||||| ||  |||||||||    
T  28928542 aacacagtccgggaaatcactgaacatgtcttcat 28928576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 36643618 - 36643751
Alignment:
Q  84 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 183  Q
    |||||||| ||||||||||| |||||||||  |||||||| ||||||||||||||||||||  || |||||||| ||||||||||  |   ||||||| |    
T  36643618 gaggaatgtaatataagggtaggaatacgtgcccaaagatgcttccatcttgtggacaaaacacaggtttgaacagcatgtttggagtccaaaaatgata 36643717  T
Q  184 aaatatgaaggagaacacagtcgggtaaatcact 217  Q
    |||| ||||||| |||||| |||||||| |||||    
T  36643718 aaatgtgaaggataacacactcgggtaagtcact 36643751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 55967007 - 55967153
Alignment:
Q  84 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 183  Q
    ||||||||||| |||||||  |||| | ||||||| |||||  ||||||||||||||||||  ||||||  || | |||| ||||| ||  ||||||| |    
T  55967007 gaggaatgcaaaataagggctggaacatgtttccagagatatctccatcttgtggacaaaacacaagttctaatgacatgcttggtcttcaaaaatgata 55967106  T
Q  184 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttca 230  Q
    |||| ||||||||||||| ||||||||| |||||  |||||||||||    
T  55967107 aaatgtgaaggagaacactgtcgggtaagtcactttatctgtcttca 55967153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 36613342 - 36613454
Alignment:
Q  87 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 186  Q
    ||||||||  |||| || |||||| ||||||||||||||||||| |||||||||||||  ||||||||| |||||| | |||  |   ||||||||||||    
T  36613342 gaatgcaaattaagagttggaataagtttccaaagatacttccaccttgtggacaaaacacaagtttgatcggcatatgtggcgtccaaaaatgacaaaa 36613441  T
Q  187 tatgaaggagaac 199  Q
    | |||||||||||    
T  36613442 tgtgaaggagaac 36613454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 231
Target Start/End: Original strand, 38863134 - 38863278
Alignment:
Q  87 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 186  Q
    |||||||||||||| |  |||||||||||| | ||||  ||||||||  |||||||||  |||||| ||| |||||||||||||||  |  |||||||||    
T  38863134 gaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatggcatgtttggtattcaacgatgacaaaa 38863233  T
Q  187 tatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 231  Q
    | | |||||||| || ||||||||| ||||||   ||||||||||    
T  38863234 tgtaaaggagaataccgtcgggtaagtcactcggcctgtcttcat 38863278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 35974097 - 35974003
Alignment:
Q  105 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaac 199  Q
    |||||||||||||| ||||   ||||||||||||||||||| ||| |||||||||| ||||| ||||   | ||||||||||| |||||||||||    
T  35974097 ggaatacgtttccagagatgtctccatcttgtggacaaaatacaactttgaacggcctgttttgtatcgaacaatgacaaaatgtgaaggagaac 35974003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 18364326 - 18364242
Alignment:
Q  70 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttg 154  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||| ||||||||| |||||||    
T  18364326 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 18364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 35968397 - 35968285
Alignment:
Q  107 aatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcg 206  Q
    |||||||||||| ||||  | ||||||| ||||||||| ||||||||||||| | ||||| ||||   | ||||||||||| ||||||||||| | ||||    
T  35968397 aatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaataatgacaaaatgtgaaggagaactccgtcg 35968298  T
Q  207 ggtaaatcactca 219  Q
    | ||| |||||||    
T  35968297 gctaactcactca 35968285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 36598599 - 36598683
Alignment:
Q  70 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttg 154  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||| ||||||||| |||||||    
T  36598599 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 36598683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 231
Target Start/End: Complemental strand, 18083168 - 18083021
Alignment:
Q  84 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 183  Q
    ||||||| ||||| ||| || |||||| ||||||| | ||  ||||||||| | ||||||| ||||||| ||||  ||| |||||| ||  |||||||||    
T  18083168 gaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 18083069  T
Q  184 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 231  Q
    |||||  ||||| ||||| ||  ||||| |||||||| || |||||||    
T  18083068 aaatacaaaggataacactgttaggtaagtcactcaacctatcttcat 18083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 231
Target Start/End: Original strand, 36617513 - 36617660
Alignment:
Q  84 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 183  Q
    ||||||| ||||| ||| || |||||| ||||||| | ||  ||||||||| | ||||||| ||||||| ||||  ||| |||||| ||  |||||||||    
T  36617513 gaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 36617612  T
Q  184 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 231  Q
    |||||  ||||| ||||| ||  ||||| |||||||| || |||||||    
T  36617613 aaatacaaaggataacactgttaggtaagtcactcaacctatcttcat 36617660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 3978206 - 3978136
Alignment:
Q  87 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 157  Q
    ||||||||| |||| || |||| |||||||||||||| |||  |||||||||| |||| ||||||||||||    
T  3978206 gaatgcaatgtaagagtaggaagacgtttccaaagatccttatatcttgtggataaaacgcaagtttgaac 3978136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 18359284 - 18359158
Alignment:
Q  105 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 204  Q
    |||||| |||||||||||| |||||| ||| |||||||||||| |||| ||||   |||||||| ||   | | ||||||||| ||||| |||||||| |    
T  18359284 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaactcgatgtttggaatccaacattgacaaaatgtgaagaagaacacaat 18359185  T
Q  205 cgggtaaatcactcaatctgtcttcat 231  Q
    | || || |||||||  ||||||||||    
T  18359184 caggcaagtcactcagcctgtcttcat 18359158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 36603644 - 36603770
Alignment:
Q  105 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 204  Q
    |||||| |||||||||||| |||||| ||| |||||||||||| |||| ||||   |||||||| ||   | | ||||||||| ||||| |||||||| |    
T  36603644 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaactcgatgtttggaatccaacattgacaaaatgtgaagaagaacacaat 36603743  T
Q  205 cgggtaaatcactcaatctgtcttcat 231  Q
    | || || |||||||  ||||||||||    
T  36603744 caggcaagtcactcagcctgtcttcat 36603770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 36636999 - 36637069
Alignment:
Q  160 catgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttca 230  Q
    |||||||||||||  ||||||||||||| |||||||  | || ||||||||| |||||||  |||||||||    
T  36636999 catgtttggtattcaaaaatgacaaaatgtgaaggattataccgtcgggtaagtcactcagcctgtcttca 36637069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 36668520 - 36668548
Alignment:
Q  18 gagctatcacgaagagtcaaaatcttaga 46  Q
    |||||||||||||||||||||||||||||    
T  36668520 gagctatcacgaagagtcaaaatcttaga 36668548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 33844280 - 33844405
Alignment:
Q  105 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 204  Q
    |||||||||||||| ||||  |||||||| |||||||||||||||||||||||||| | || ||| ||  ||||||||||||| | ||  ||||  ||||    
T  33844280 ggaatacgtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcagt 33844379  T
Q  205 cgggtaaatcactcaatctgtcttca 230  Q
    ||||||| ||||| | ||| ||||||    
T  33844380 cgggtaagtcacttagtctatcttca 33844405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 33840288 - 33840413
Alignment:
Q  105 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 204  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||| |||| || | || | |  |  ||||||||||||| | ||  ||||  ||||    
T  33840288 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgtattcgattctcaaaaatgacaaaatgtaaacaagaaggcagt 33840387  T
Q  205 cgggtaaatcactcaatctgtcttca 230  Q
    ||||||| ||||| | ||||||||||    
T  33840388 cgggtaagtcacttagtctgtcttca 33840413  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 7140746 - 7140852
Alignment:
Q  125 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctg 224  Q
    |||||||||| |||||||||| ||||||||||| || | ||| |||||  |||| || |  || ||||| | ||||||||||||||||||||| ||  ||    
T  7140746 cttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcgggtaaatcacttaacttg 7140845  T
Q  225 tcttcat 231  Q
    |||||||    
T  7140846 tcttcat 7140852  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 8680360 - 8680466
Alignment:
Q  125 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctg 224  Q
    |||||||||| |||||||||| ||||||||||| || | ||| |||||  |||| || |  || ||||| | ||||||||||| ||||||||| ||  ||    
T  8680360 cttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcggctaaatcacttaacttg 8680459  T
Q  225 tcttcat 231  Q
    |||||||    
T  8680460 tcttcat 8680466  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 32413712 - 32413648
Alignment:
Q  105 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 169  Q
    |||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggt 32413648  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 6844228 - 6844163
Alignment:
Q  92 caatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 157  Q
    ||||||||| ||||||| | ||||||||||||  ||||||||| |||| | |||||||||||||||    
T  6844228 caatataagagtgggaagatgtttccaaagattgttccatcttttggatagaatgcaagtttgaac 6844163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 14677238 - 14677153
Alignment:
Q  126 ttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaa 211  Q
    ||||||||||| ||||||| ||||||| ||||  | | |||||| ||  ||||||||||||||||||||| ||||| || ||||||    
T  14677238 ttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgttgggtaa 14677153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 44501441 - 44501493
Alignment:
Q  105 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 157  Q
    |||| |||||||||||||| ||||||||| | ||||||||||||||| |||||    
T  44501441 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaac 44501493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 19675096 - 19675272
Alignment:
Q  22 tatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaag 121  Q
    ||||||||||||||||||||||||  | ||||  || |||   ||| | ||||| |||||  || |||||||| ||||| || |||||| ||||||| ||    
T  19675096 tatcacgaagagtcaaaatcttaggcacgaatttcgaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttccagag 19675195  T
Q  122 atacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaa 198  Q
    || | ||||||| ||||||||||  |||||||||||||||| ||| |  |   ||||||||||||| ||||||||||    
T  19675196 attcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19675272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 19658257 - 19658433
Alignment:
Q  22 tatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaag 121  Q
    ||||||||||||||||||||||||  | ||||   | |||   ||| | ||||| |||||  || |||||||| ||||| || |||||| ||||||| ||    
T  19658257 tatcacgaagagtcaaaatcttaggcacgaatttggaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttccagag 19658356  T
Q  122 atacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaa 198  Q
    || | ||||||| ||||||||||  |||||||||||||||| ||| |  |   ||||||||||||| ||||||||||    
T  19658357 attcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19658433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 17667110 - 17667196
Alignment:
Q  125 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaa 211  Q
    |||||||||||| ||||||| ||||||| ||||  | | |||||| ||  ||||||||||||||||||||| ||||| |||||||||    
T  17667110 cttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgtcgggtaa 17667196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 25064332 - 25064275
Alignment:
Q  112 gtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 169  Q
    ||||||||||||  |||||||||| |||||| ||||| ||||| || |||||||||||    
T  25064332 gtttccaaagattgttccatcttggggacaatatgcatgtttggactgcatgtttggt 25064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 35335953 - 35335844
Alignment:
Q  89 atgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaata 188  Q
    |||||||||||| || |||||||||||||| ||||  ||||||||| ||||||||| ||||||||||||  | ||||||| ||   | |||||||||||     
T  35335953 atgcaatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatg 35335854  T
Q  189 tgaaggagaa 198  Q
    ||||| ||||    
T  35335853 tgaagtagaa 35335844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 27701888 - 27701960
Alignment:
Q  97 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 169  Q
    ||||||| |||| ||||||||| ||||  |||||||||||||| | ||||  |||||||||||||||||||||    
T  27701888 taagggttggaagacgtttccagagattgttccatcttgtggaaagaatggtagtttgaacggcatgtttggt 27701960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 43864058 - 43864104
Alignment:
Q  114 ttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggc 160  Q
    ||||||||||   |||||||| |||||||||||||||||||||||||    
T  43864058 ttccaaagattgatccatcttttggacaaaatgcaagtttgaacggc 43864104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 43875208 - 43875269
Alignment:
Q  97 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacg 158  Q
    |||| ||||||| ||  ||||||||||   |||||||| |||||||||||||||||||||||    
T  43875208 taagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacg 43875269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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