View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5309-Insertion-1 (Length: 758)
Name: NF5309-Insertion-1
Description: NF5309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5309-Insertion-1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 6 - 534
Target Start/End: Complemental strand, 47301455 - 47300927
Alignment:
| Q |
6 |
cagaattggaagcaacccattggagtgagttccaacaatcattataacaagcaggtagagggtgttctggagcgagtctgtattcaacagaaacaactat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47301455 |
cagaattggaagcaacccattggagtgagttccaacaatcattataacaagcaggtagagggtgttctggagcaagtctgtattcaacagaaacaactat |
47301356 |
T |
|
| Q |
106 |
tgaatttgcttgcggaacgaagacgttgaagtgttcgtggtagagtttggagaaagcggattcaaagaagaaaccaccgccatggaagaagaccaagatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47301355 |
tgaatttgcttgcggaacgaagacgttgaagtgttcgtggtagagtttggagaaagcggattcaaagaagaaaccaccgccatggaagaagaccaagatg |
47301256 |
T |
|
| Q |
206 |
ggaagttttgtagtggggtttttggggaggtagatacgagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttgggtggtcgg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47301255 |
ggaagttttgtagtggggtttttggggaggtagatacgagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttgggtggtcgg |
47301156 |
T |
|
| Q |
306 |
gattgggtggtactgtcggtgcttgccgtggacggtcgacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgcgttttgttgc |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47301155 |
gattgggtggtactgtcggtgcttgccgtggacggtcgacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgtgttttgttgc |
47301056 |
T |
|
| Q |
406 |
atcggtggtgatggatgccattgattcagagatgttagaaacaggggagtgtttggatttttacaagagtagtgatcatgcgatgacaagtccaacctaa |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| | |
|
|
| T |
47301055 |
atcggtggtgatggatgccattgattcagagttgttagaaacaggggagtgtttggatttttataagagtagtgattatgtgatgacaagtccaacctga |
47300956 |
T |
|
| Q |
506 |
tcaggttagaacacgcattaaaattagta |
534 |
Q |
| |
|
|| |||||||||||||| ||||||||||| |
|
|
| T |
47300955 |
tctggttagaacacgcaataaaattagta |
47300927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 6 - 438
Target Start/End: Complemental strand, 47304353 - 47303927
Alignment:
| Q |
6 |
cagaattggaagcaacccattggagtgagttccaacaatcattataacaagcaggtagagggtgttctggagcgagtctgtattcaacagaaacaactat |
105 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47304353 |
cagaattagaagcaacccattggagtgaattccaacagtcattataacaagcaggtagagggtgttctggagcgagtctgtattcaacagaaacaactat |
47304254 |
T |
|
| Q |
106 |
tgaatttgcttgcggaacgaagacgttgaagtgttcgtggtagagtttggagaaagcggattcaaagaagaaaccaccgccatggaagaagaccaagatg |
205 |
Q |
| |
|
|||||||||| | |||| ||||| ||||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47304253 |
tgaatttgctagtggaatgaagatgttgaagtgttcgtggtgcactttggagaaagcggactcgaagaagaaaccaccgccatggaagaagactaagatg |
47304154 |
T |
|
| Q |
206 |
ggaagttttgtagtggggtttttggggaggtagatacgagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttgggtggtcgg |
305 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
47304153 |
gggagttttgtggtggggtttttggggaggtagatacgagcggagatattggggttttgagagatgatgatgtctttggatggtgagtttgggtggttgg |
47304054 |
T |
|
| Q |
306 |
gattgggtggtactgtcggtgcttgccgtggacggtcgacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgcgttttgttgc |
405 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| | | |
|
|
| T |
47304053 |
gattgggtggtaccgtcggtggttgccgtggacggtcgactgtgccgtcgctgtagactgtgatataggtaggaatttcagagataatgtgttttggtac |
47303954 |
T |
|
| Q |
406 |
atcggtggtgatggatgccattgattcagagat |
438 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
47303953 |
atcggtggt------tgccattgattcagagat |
47303927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 531 - 586
Target Start/End: Complemental strand, 47300635 - 47300580
Alignment:
| Q |
531 |
agtaatattctatagatatgtgtgtaataactttttaaagcataataattgactta |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47300635 |
agtaatattctatagatatgtgtgtaataactttttaaagcataataattgactta |
47300580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 47332962 - 47332915
Alignment:
| Q |
55 |
agcaggtagagggtgttctggagcgagtctgtattcaacagaaacaac |
102 |
Q |
| |
|
|||||| |||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
47332962 |
agcaggaagagggtgttctggtgcaagtctatattcaacagaaacaac |
47332915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 6 - 468
Target Start/End: Complemental strand, 17841592 - 17841121
Alignment:
| Q |
6 |
cagaattggaagcaacccattggagtgagttccaacaatcattataacaagcaggtagagggtgttctggagcgagtctgtattcaacagaaacaactat |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17841592 |
cagaattggaagcaacccattgaagtgaattccaacagtcatcataacaagcaggtagagggtgttctggagcgagtctgtattcaacagaaacaacaat |
17841493 |
T |
|
| Q |
106 |
tgaatttgcttgcggaacgaagacgttgaagtgttcgtggtagagtttggagaaagcggattcaaagaagaaaccaccgccatggaagaagaccaagatg |
205 |
Q |
| |
|
||||| ||| | ||||||||||| ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17841492 |
ggaattcgctagtggaacgaagacattgcagtgttcgtggtggattttggagaaagcggattcaaagaagaaaccaccgccatggaagaagaccaagatg |
17841393 |
T |
|
| Q |
206 |
ggaagtttt---gt-----agtggg-gtttttggggaggtagatacgagcagagatgttggggttttgagagatgatgatgtctttggatggtgaatttg |
296 |
Q |
| |
|
| || |||| || |||| | | ||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17841392 |
gaaaatttttgagtctcagagtgagagacttttgggagatagatacgagcggagatgttggggttttgagagatgatgatatctttggatggtgaatttg |
17841293 |
T |
|
| Q |
297 |
ggtggtcgggattgggtggtactgtcggtgcttgccgtggacggtcgacggtgccgtcgctgtagactgtgatataggtaggaatttctgagatgatgcg |
396 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |
|
|
| T |
17841292 |
ggtggtcgggattgggtgagacagtcggtgcttgccgtggacggtcgacggtgccgtcgctgtagactgtgatgtaggtaggaatttcagagatgatgtg |
17841193 |
T |
|
| Q |
397 |
ttttgttgcatcggtggtgatggatgccattgattcagagatgttagaaacaggggagtgtttggattttta |
468 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
17841192 |
ttttgttgtatctgtggtgatggatgccattgattcagagatgctaaaaacaggggagtgtttggattttta |
17841121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 655
Target Start/End: Original strand, 35931828 - 35931891
Alignment:
| Q |
593 |
tttaccatggttaaacacattcaacaacattcaatatcca-tctttcaatttccaacactccac |
655 |
Q |
| |
|
||||| ||||| ||||| |||||||||| ||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
35931828 |
tttacaatggtaaaacaaattcaacaaccttcaacatccactttttcaatttccaacactccac |
35931891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 655
Target Start/End: Complemental strand, 33077978 - 33077915
Alignment:
| Q |
593 |
tttaccatggttaaacacattcaacaacattcaatatcca-tctttcaatttccaacactccac |
655 |
Q |
| |
|
||||| ||||| ||||| |||||||||| |||||||||| | ||||||||||||||||||||| |
|
|
| T |
33077978 |
tttacaatggtaaaacaaattcaacaaccctcaatatccactttttcaatttccaacactccac |
33077915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 12493093 - 12493147
Alignment:
| Q |
62 |
agagggtgttctggagcgagtctgtattcaacagaaacaactattgaatttgctt |
116 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
12493093 |
agagggtgttctagagagagtatgtattcaacataaacaactatgtaatttgctt |
12493147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University