View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5309-Insertion-10 (Length: 264)
Name: NF5309-Insertion-10
Description: NF5309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5309-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 6148598 - 6148348
Alignment:
| Q |
8 |
attgatacctcattttctcccaattttaactattnnnnnnncctagatgactggtattttgccaagcacttaatttatggatctaatccaagataatata |
107 |
Q |
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| T |
6148598 |
attgatacctcattttctcccaattttaactattaaaaaaaccaagatgactggtattttgccaagcacttaatttatggatctaatccaagataatata |
6148499 |
T |
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| Q |
108 |
gaataagtaaatacatgaccatgtattannnnnnnnnnnnnnnaataaatattatcagttgatcttaattaataatatcaaccttgtattgcttcaccat |
207 |
Q |
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| T |
6148498 |
gaataagtaaatacatgaccatgtattatttttattttttt---ataaatattatcagttgatcttaattaataatatcaaccttgtattgcttcaccat |
6148402 |
T |
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| Q |
208 |
cgccattgtttcattatttttctattctccaaaaaataggcacacggaactttt |
261 |
Q |
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| T |
6148401 |
cgccattgtttcattatttttctattctccaaaaaataggcacacggatctttt |
6148348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 6129404 - 6129291
Alignment:
| Q |
152 |
ataaatattatcagttgatcttaattaataatatcaaccttgtattgcttcaccatcgc-------------cattgtttcattatttttctattctcca |
238 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | || ||||||||||||||||||||||||| |
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| T |
6129404 |
ataaatattatcagttgatcttaattaaaaatatcaaccttgtgttgcttcaccatcactagtgattctaaacaatgtttcattatttttctattctcca |
6129305 |
T |
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| Q |
239 |
aaaaataggcacac |
252 |
Q |
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| T |
6129304 |
aaaaataggcacac |
6129291 |
T |
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