View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5309-Insertion-11 (Length: 187)
Name: NF5309-Insertion-11
Description: NF5309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5309-Insertion-11 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 7 - 187
Target Start/End: Complemental strand, 40662557 - 40662377
Alignment:
| Q |
7 |
acacacactaaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatctgtggttcagtcccttttgcatgatca |
106 |
Q |
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| T |
40662557 |
acacacactaaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatttgtggttcagtcccttttgcatgatca |
40662458 |
T |
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| Q |
107 |
tgaaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattccactttgaatataatgggaataaccgtttctct |
187 |
Q |
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| T |
40662457 |
tgaaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattctactttgaatataatgggaataaccgtttctct |
40662377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 40676114 - 40676029
Alignment:
| Q |
15 |
taaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatctgtggtt--cagtcccttttg |
98 |
Q |
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| T |
40676114 |
taaggatcaaagatatgaatacacagaagatgctctagaaagtaaatagtgaaagaatcctgatttatggttcacagtcccttttg |
40676029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 40675996 - 40675927
Alignment:
| Q |
109 |
aaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattccactttgaatataatgggaataacc |
179 |
Q |
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| T |
40675996 |
aaacaagttttgtgaattgtcgatcatcctgcaaatcagag-attctactttgaatataatgggaaaaacc |
40675927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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