View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5309-Insertion-12 (Length: 154)

Name: NF5309-Insertion-12
Description: NF5309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5309-Insertion-12
NF5309-Insertion-12
[»] chr2 (3 HSPs)
chr2 (8-154)||(13449323-13449469)
chr2 (8-154)||(13462344-13462490)
chr2 (8-111)||(13441203-13441306)
[»] chr8 (1 HSPs)
chr8 (17-154)||(12640569-12640706)
[»] chr5 (2 HSPs)
chr5 (21-109)||(28386333-28386421)
chr5 (8-110)||(12541677-12541779)
[»] chr4 (3 HSPs)
chr4 (17-107)||(48959148-48959238)
chr4 (17-82)||(48963315-48963380)
chr4 (17-103)||(48966340-48966426)
[»] chr7 (1 HSPs)
chr7 (8-153)||(3416609-3416754)
[»] chr6 (2 HSPs)
chr6 (17-75)||(12589275-12589333)
chr6 (24-80)||(12482550-12482606)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 1e-70; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 13449469 - 13449323
Alignment:
Q  8 ccctcttcttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctca 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13449469 ccctctttttgacatagcaactatgtttgcatcccgtggccagcaagtaacagtcatcaccactcccgccaacgcaaaatcccttaccaaatctctctca 13449370  T
Q  108 tccgacgctccttcattccttcgtcttcacaccgttgacttcccctc 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13449369 tccgacgctccttcattccttcgtcttcacaccgttgacttcccctc 13449323  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 13462490 - 13462344
Alignment:
Q  8 ccctcttcttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctca 107  Q
    ||||||| |||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  13462490 ccctctttttgacatagcaattatgtttgcatcccgtggccaacacgtcacagtcatcaccactccctccaacgtccaatcccttaccaaatctctctca 13462391  T
Q  108 tccgacgctccttcattccttcgtcttcacaccgttgacttcccctc 154  Q
    |||| |||||| ||  |||||||  |||||||| | || ||||||||    
T  13462390 tccgccgctccctccctccttcgctttcacaccatcgaattcccctc 13462344  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 13441306 - 13441203
Alignment:
Q  8 ccctcttcttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctca 107  Q
    |||||||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||    
T  13441306 ccctctttgtgacatagcaactatgtttgcatcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctctca 13441207  T
Q  108 tccg 111  Q
    ||||    
T  13441206 tccg 13441203  T

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Target: chr8 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 12640569 - 12640706
Alignment:
Q  17 tgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatccgacgct 116  Q
    |||||||||| || |||||||||||| |||||| ||||||||  ||||||||||||||||||||||  | | | |||||||||||||||| | || || |    
T  12640569 tgacatagcagctttgtttgcatcccatggccaacaagtcacgatcatcaccactccctccaacgcccatttctttaccaaatctctctccttcgtcgat 12640668  T
Q  117 ccttcattccttcgtcttcacaccgttgacttcccctc 154  Q
    || |  ||||| || ||||||||||| |||||||||||    
T  12640669 ccgtttttcctccgccttcacaccgtcgacttcccctc 12640706  T

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Target: chr5 (Bit Score: 49; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 28386421 - 28386333
Alignment:
Q  21 atagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctcatc 109  Q
    ||||||||| |||||||||| |||||||| || |||||| ||||||||||||||||||| ||  |||||||||| ||| ||||||||||    
T  28386421 atagcaactttgtttgcatcacgtggccaacatgtcacaatcatcaccactccctccaatgcccaatcccttactaaaactctctcatc 28386333  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 12541779 - 12541677
Alignment:
Q  8 ccctcttcttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctca 107  Q
    |||||||  ||| ||||||||| |||||||||| | |||||| ||||||||| ||||||||||||||||||| |   || ||||||||||||||||| ||    
T  12541779 ccctctttgtgatatagcaactttgtttgcatcacatggccaacaagtcacaatcatcaccactccctccaatgttgaaacccttaccaaatctctccca 12541680  T
Q  108 tcc 110  Q
    |||    
T  12541679 tcc 12541677  T

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Target: chr4 (Bit Score: 47; Significance: 4e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 48959238 - 48959148
Alignment:
Q  17 tgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctca 107  Q
    ||||||||||||| |||||||||||| |||||| ||||| ||| |||||||||||||||||||| |  | | | |||||||||||||||||    
T  48959238 tgacatagcaactctgtttgcatcccatggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctctctca 48959148  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 48963380 - 48963315
Alignment:
Q  17 tgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgc 82  Q
    |||||||||| || ||||||| ||||||||||| ||||||||| ||||||||||||||||||||||    
T  48963380 tgacatagcagctctgtttgcgtcccgtggccaacaagtcacaatcatcaccactccctccaacgc 48963315  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 48966426 - 48966340
Alignment:
Q  17 tgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctct 103  Q
    ||||||||||||||| |||||||| | |||||| ||||||||  ||||||| |||||||| ||||| || | |||| ||||||||||    
T  48966426 tgacatagcaactatctttgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctct 48966340  T

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Target: chr7 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 3416609 - 3416754
Alignment:
Q  8 ccctcttcttgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaacgcaaaatcccttaccaaatctctctca 107  Q
    |||||||  ||| |||||| ||||||||||||||| |||||| || |||||| ||||||||||||||||||| || ||||  ||||| |||||||| ||     
T  3416609 ccctctttctgatatagcagctatgtttgcatcccatggccaacatgtcacaatcatcaccactccctccaatgccaaatttcttacaaaatctctttct 3416708  T
Q  108 tccgacgctccttcattccttcgtcttcacaccgttgacttcccct 153  Q
    |  | |||||| |  ||||| || ||||||||||| ||||| ||||    
T  3416709 tatgccgctcccttcttcctccgccttcacaccgtcgactttccct 3416754  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 12589275 - 12589333
Alignment:
Q  17 tgacatagcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccct 75  Q
    |||||| |||||  ||||||||||||||||||| ||||||||| ||| |||||||||||    
T  12589275 tgacattgcaaccctgtttgcatcccgtggccaacaagtcacaatcaccaccactccct 12589333  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 12482550 - 12482606
Alignment:
Q  24 gcaactatgtttgcatcccgtggccagcaagtcacagtcatcaccactccctccaac 80  Q
    |||||| |||||||||| |||||||| || |||||| ||||||||||||| ||||||    
T  12482550 gcaactctgtttgcatcacgtggccatcatgtcacaatcatcaccactccttccaac 12482606  T

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