View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5309-Insertion-3 (Length: 519)
Name: NF5309-Insertion-3
Description: NF5309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5309-Insertion-3 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 162 - 519
Target Start/End: Original strand, 8897819 - 8898171
Alignment:
| Q |
162 |
tgttcgataactcagaagaactatatgcggaactctccttttataggtaaaattcgcaacc--tccggagaaacttggggaacaagatctccgcggatca |
259 |
Q |
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| T |
8897819 |
tgttcgataactcagaagaactat--gcg-aactctccttttatagggaaaattcgcaaccactccggagaaacttggggaacaagatctccgcagatca |
8897915 |
T |
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| Q |
260 |
aatcaagtaataaactgattagataagcttgggcaagaagttggagcgcgcaagcggattagatcggattgttagttggatcagatatacacgaaacata |
359 |
Q |
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| T |
8897916 |
aatcaagcaataaacggattaaataagcttgggcaagaagttggagcgcgcaagcggattagatcggatagttagttggatcaaatatacacgaaacata |
8898015 |
T |
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| Q |
360 |
ttccttaagaaagcattatcacgtaataataaaattaattaattaataacattttcggggtcataaaaaatatatatcttttagctcaaagtttaaaccc |
459 |
Q |
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| T |
8898016 |
ttccttaagaaagcactatcatgtaataataaaattaattaattaataacatttt-tgggtcataaaaaatatatatcttttagctc-aagctcaagccc |
8898113 |
T |
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| Q |
460 |
aagccccgacgggtggtggcagcgacgtcgctcgtgatatattcttgtaagtgttctctc |
519 |
Q |
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| T |
8898114 |
aag-cccgac-ggtggtggcagcgacgtcgatcgtgatatattcacgtaagtgttctctc |
8898171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 8897665 - 8897736
Alignment:
| Q |
7 |
aaattatacaagaaagagtcaccgccttcaaaaaatcgtttgtatgtataccacttgaaactaaagggatat |
78 |
Q |
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| T |
8897665 |
aaattatacaagaaagagttaccgcctccaaaaaatcgtttgtatgtataccgcttgaaactaaagggatat |
8897736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 31604400 - 31604359
Alignment:
| Q |
330 |
gttagttggatcagatatacacgaaacatattccttaagaaa |
371 |
Q |
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| T |
31604400 |
gttagttggataacatatacacgaaacatattctttaagaaa |
31604359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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