View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5309-Insertion-4 (Length: 431)
Name: NF5309-Insertion-4
Description: NF5309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5309-Insertion-4 |
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| [»] scaffold0368 (2 HSPs) |
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Alignment Details
Target: scaffold0368 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 12858 - 13101
Alignment:
| Q |
10 |
atctttatacataatccaaaggtacataatgcatatccctaaccctaaaaatttgacgcctacctctttcaaatttgaatttcaaattcccttcaactta |
109 |
Q |
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||||||||| ||||| |||||||||||||||||| ||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
12858 |
atctttatatctaatctaaaggtacataatgcata-cccaaaccctaaaaatttggcgcctccctcttccaaatttgaatttcaaattcccttcaactta |
12956 |
T |
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| Q |
110 |
nnnnnnnnngataaaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatatacatt-accattttgtcttccacgttac |
208 |
Q |
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| T |
12957 |
tttttttttgacaaaattcccttcaacctattgtttgcatcctaaatgacatgcatttactctcatctatatgcatttaccattttgtcttccacattat |
13056 |
T |
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| Q |
209 |
tttttcttcttcattttccaacaaagcaaaatttgtctctgaatt |
253 |
Q |
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| T |
13057 |
tttttcttcttcatttttcaacaaagcaaaatttatctctgaatt |
13101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 13155 - 13264
Alignment:
| Q |
310 |
actggaaacccgccaccatttactcctctgatttattcctcgccggcagaaagttaaagccatgcatgctcttactcttatgcttcttcccttttcaact |
409 |
Q |
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| T |
13155 |
actggaaacccgccaccatttactcctctgatttatccctcgccgacagaaagttaa------------tcttactcttatgcttcttcccttttcaact |
13242 |
T |
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| Q |
410 |
ccagcggcgctgaactcggcgg |
431 |
Q |
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| T |
13243 |
ccagcggcgctgaactcggcgg |
13264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 42837949 - 42837706
Alignment:
| Q |
10 |
atctttatacataatccaaaggtacataatgcatatccctaaccctaaaaatttgacgcctacctctttcaaatttgaatttcaaattcccttcaactta |
109 |
Q |
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| T |
42837949 |
atctttatatctaatctaaaggtacataatgcata-cccaaaccctaaaaatttggcgcctccctcttccaaatttgaatttcaaattcccttcaactta |
42837851 |
T |
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| Q |
110 |
nnnnnnnnngataaaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatatacatt-accattttgtcttccacgttac |
208 |
Q |
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| T |
42837850 |
tttttttttgacaaaattcccttcaacctattgtttgcatcctaaatgacatgcatttactctcatctatatgcatttaccattttgtcttccacattat |
42837751 |
T |
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| Q |
209 |
tttttcttcttcattttccaacaaagcaaaatttgtctctgaatt |
253 |
Q |
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| T |
42837750 |
tttttcttcttcatttttcaacaaagcaaaatttatctctgaatt |
42837706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 310 - 431
Target Start/End: Complemental strand, 42837652 - 42837543
Alignment:
| Q |
310 |
actggaaacccgccaccatttactcctctgatttattcctcgccggcagaaagttaaagccatgcatgctcttactcttatgcttcttcccttttcaact |
409 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42837652 |
actggaaacccgccaccatttactcctctgatttatccctcgccgacagaaagttaa------------tcttactcttatgcttcttcccttttcaact |
42837565 |
T |
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| Q |
410 |
ccagcggcgctgaactcggcgg |
431 |
Q |
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| T |
42837564 |
ccagcggcgctgaactcggcgg |
42837543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 25281049 - 25281163
Alignment:
| Q |
123 |
aaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatataca-ttaccattttgtcttccacgttactttttcttcttca |
221 |
Q |
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| T |
25281049 |
aaattccctt-aacttattgtttgcatcggaaataacatgcatttactctcatctataagcatttaccattttgtctcccacgttactt----ttcttca |
25281143 |
T |
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| Q |
222 |
ttttccaacaaagcaaaatt |
241 |
Q |
| |
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|||| |||||||||| |||| |
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| T |
25281144 |
tttttcaacaaagcagaatt |
25281163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 25280964 - 25281058
Alignment:
| Q |
10 |
atctttatacataatccaaaggtacataatgcatatcc-ctaaccctaaaaatttgac-gcctacctctttcaaatttgaatttcaaattccctt |
102 |
Q |
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||||||||| |||||||||||||||||||||||| || |||||||||||||| || | ||| |||||| |||||||||||||||||||||||| |
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| T |
25280964 |
atctttatatctaatccaaaggtacataatgcataccctctaaccctaaaaatatggcaccctccctcttccaaatttgaatttcaaattccctt |
25281058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 12346777 - 12346892
Alignment:
| Q |
123 |
aaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatataca-ttaccattttgtcttccacgttactttttcttcttca |
221 |
Q |
| |
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|||||||||| |||||||| ||||||||| |||| || |||||||||||||||||||| || |||||||||||||| ||| |||||||| ||||||| |
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| T |
12346777 |
aaattccctt-aacttattgtttgcatcggaaataacatgcatttactctcatctataagcatttaccattttgtctcccatgttacttt---ttcttca |
12346872 |
T |
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| Q |
222 |
ttttccaacaaagcaaaatt |
241 |
Q |
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|||| |||||||||| |||| |
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| T |
12346873 |
tttttcaacaaagcagaatt |
12346892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 12346703 - 12346786
Alignment:
| Q |
21 |
taatccaaaggtacataatgcatatcc-ctaaccctaaaaatttgacgcc-tacctctttcaaatttgaatttcaaattccctt |
102 |
Q |
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|||||||||||||||||||||||| || |||||||||||||| || | || | |||||| |||||||||||||||||||||||| |
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| T |
12346703 |
taatccaaaggtacataatgcataccctctaaccctaaaaatctggcaccctccctcttccaaatttgaatttcaaattccctt |
12346786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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