View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5309-Insertion-5 (Length: 393)
Name: NF5309-Insertion-5
Description: NF5309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5309-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 6 - 383
Target Start/End: Original strand, 31247073 - 31247447
Alignment:
| Q |
6 |
caattggatggttacattgcttagaaatcctaaatttgggggtaaacaattttgttacattaccttctagcatcaaggaactttccaaacttagacaatt |
105 |
Q |
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| T |
31247073 |
caattggaaggctacattgcttagaaattctaaatgtgggaggaaacaattttgttactctaccttctagcatcaaggaactttccaaacttagacagtt |
31247172 |
T |
|
| Q |
106 |
gaacttggagcattgtaagcagctgaaatatttgcctgagctcccatcaaatactgtcttgccagtaagaaaaacattttttggtagatatgtagctgga |
205 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31247173 |
gaacttggagcattgtaaacagctgaaatatttgcctgagctctcatcaaatactgtcttgccagtaggaaaaacattttttggtagatatgtagctgga |
31247272 |
T |
|
| Q |
206 |
ttatatatttttgactgccccagtttaattgagatggaacgctgttatagaatgactttttcttggatgatacaactccttgaggtgcctactccatcct |
305 |
Q |
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| T |
31247273 |
ttatatatttttgactgccccggtttaattgagatggaatgctgttatagaatggctttttcttggatgatacaactcctgaaggtgcctactccatcct |
31247372 |
T |
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| Q |
306 |
ttttctttttgtctatatctctttgtatgtgattgaactaatacattaccaatttgtctggtataaggtgcacatgca |
383 |
Q |
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| T |
31247373 |
ttttc---ttgtctatatttatttgtatgtgattgaactaaaacataactaatttatctggtaccaggtgcacatgca |
31247447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 6 - 346
Target Start/End: Original strand, 31212662 - 31212982
Alignment:
| Q |
6 |
caattggatggttacattgcttagaaatcctaaatttgggggtaaacaattttgttacattaccttctagcatcaaggaactttccaaacttagacaatt |
105 |
Q |
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| T |
31212662 |
caattgggttgttgcattgcttagaaatgctaaagttaggggggaacaattttgtgacactaccttctagcatgaaataactttccaaacttagagaatt |
31212761 |
T |
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| Q |
106 |
gaacttggagcattgtaagcagctgaaatatttgcctgagctcccatcaaatactgtcttgccagtaagaaaaacattttttggtagatatgtagctgga |
205 |
Q |
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| T |
31212762 |
gaacttggagcactgtaagcagctgaa-------------ctcccatcaaaatttgtttggccattaagacaaacactttctgttcattatg------ga |
31212842 |
T |
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| Q |
206 |
ttatatatttttgactgccccagtttaattgagatggaacgctgttatagaatgactttttcttggatgatacaactccttgaggtgcctactccatcct |
305 |
Q |
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| T |
31212843 |
ttatatatttttgactgccccagtttaattgacatggaatgctgttataaaatggctttttcttggatgatacaactccttaaggtgcctacaccatcc- |
31212941 |
T |
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| Q |
306 |
ttttctttttgtctatatctctttgtatgtgattgaactaa |
346 |
Q |
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| T |
31212942 |
ttttcctcttgtctatatttatttttatgtgattaaactaa |
31212982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 204 - 348
Target Start/End: Original strand, 31304367 - 31304511
Alignment:
| Q |
204 |
gattatatatttttgactgccccagtttaattgagatggaacgctgttatagaatgactttttcttggatgatacaactccttgaggtgcctactccatc |
303 |
Q |
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|||||||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||||||| |||||||||| |||||||| |||| || |
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| T |
31304367 |
gattatatatttttgactgccccagtttaattgacacaaaatgctgttatagaatggctttttcttggatggtacaactcctgcaggtgcctcctccctc |
31304466 |
T |
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| Q |
304 |
ctttttctttttgtctatatctctttgtatgtgattgaactaata |
348 |
Q |
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| T |
31304467 |
ttttttccttttgtctatatctctgtttatgtgattcaactaata |
31304511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 13615032 - 13615176
Alignment:
| Q |
201 |
ctggattatatatttttgactgccccagtttaattgagatggaacgctgttatagaatgactttttcttggatgatacaactccttgaggtgcctactcc |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||| | || |||||||||||||| |||||||||||||| || |||||||| |||||||| |||| |
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| T |
13615032 |
ctggattatatatttttgattgccccagtttaattgacacaaaatgctgttatagaatggctttttcttggatggtaaaactccttcaggtgcctcctcc |
13615131 |
T |
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| Q |
301 |
atcctttttctttttgtctatatctctttgtatgtgattgaacta |
345 |
Q |
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| T |
13615132 |
atcctttttccttttgtctatatctctttttatctgattcaacta |
13615176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 13614845 - 13614990
Alignment:
| Q |
8 |
attggatggttacattgcttagaaatcctaaatttgggggtaaacaattttgttacattaccttctagcatcaaggaactttccaaacttagacaattga |
107 |
Q |
| |
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||||| |||||||| |||||||||||||||| ||||| | |||| |||||||| |||| |||| || | |||||||||||||||||| |||||| |
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| T |
13614845 |
attgggtggttacactgcttagaaatcctaaggttgggtgggaacagatttgttactctaccgcctagtatagaagaactttccaaacttagaaaattga |
13614944 |
T |
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| Q |
108 |
acttggagcattgtaagcagctgaaatatttgcctgagctcccatc |
153 |
Q |
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| T |
13614945 |
acttgaatcactgtaagcaactgaaatatttaccggaactcccatc |
13614990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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