View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5309-Insertion-7 (Length: 498)
Name: NF5309-Insertion-7
Description: NF5309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5309-Insertion-7 |
 | |
|
| [»] chr3 (23 HSPs) |
| |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 8 - 498
Target Start/End: Original strand, 679602 - 680092
Alignment:
| Q |
8 |
aaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679602 |
aaagcttagtgatgtccatatgtgattctccaaaggagggagtaacttatactttctaacggaaggattccacaacaaataagaaccagcttttagcatt |
679701 |
T |
|
| Q |
108 |
cagtaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtag |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679702 |
cagcaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtag |
679801 |
T |
|
| Q |
208 |
aagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679802 |
aagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattg |
679901 |
T |
|
| Q |
308 |
aaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttggtaatttgatgggaaacctaccgagaatctc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679902 |
aaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagaggcatcgaagttggtaatttgatgggaaacctaccgagaatctc |
680001 |
T |
|
| Q |
408 |
agggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggttccagccgtatggacgatgatgtcgtttgggtcttcctcc |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
680002 |
agggaggacatcgaagagaagagtgggaagtggtggcggagatgttatggttccagccgtatggacgatgatgtcgtttgggtcttcctcc |
680092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 498
Target Start/End: Original strand, 747520 - 748015
Alignment:
| Q |
8 |
aaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
747520 |
aaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaatatgaaccagcttttagcatg |
747619 |
T |
|
| Q |
108 |
cagtaaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtag |
207 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
747620 |
cagcaaaagatgccatcgcaagatcacattacgtccacaaagttacctcgaattgtaagagtattaggagggtaaagttgtgtatgtgtaacaacgatag |
747719 |
T |
|
| Q |
208 |
aagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattg |
307 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
747720 |
aagtagataaaaccgaggggattggagaaacatactcaactaactcagccaagttgttccaagaggttatcatgaggtggtggcgcttagttgataattg |
747819 |
T |
|
| Q |
308 |
aaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg-----gtaatttgatgggaaacctaccgaga |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
747820 |
aaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagaggcatcgaagttgtacgagtaatttgatgggaagcctaccgaga |
747919 |
T |
|
| Q |
403 |
atctcagggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggttccagccgtatggacgatgatgtcgtttgggtcttcctcc |
498 |
Q |
| |
|
| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
747920 |
aactcagggaaaacatcgaatggaagagtgggaagtggcggcggagatgttatggttccagccgtatggacgatgatgtcgtttggatcttcctcc |
748015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 36 - 348
Target Start/End: Original strand, 9595049 - 9595361
Alignment:
| Q |
36 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagtaaaagatgccatcgcaagagcaca |
135 |
Q |
| |
|
||||||||||| | |||| || | |||||||||||||| |||||||| | ||||||||||| || || | || |||| ||||||||||||||||||| |
|
|
| T |
9595049 |
tccaaaggaggcaataacttaaattttctaatggaagggttccacaaaacataagaaccaggcttgagaaaacaacaaaaaatgccatcgcaagagcaca |
9595148 |
T |
|
| Q |
136 |
ttacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga |
235 |
Q |
| |
|
||||||||| | ||| || | |||| ||| |||||||||||||||||||||| |||||||||| ||||||||| || |||| ||| |||||||||| |
|
|
| T |
9595149 |
atacgtccacgtatttagatccatttgtgagagtattaggagggtaaagttgtgtctgtgtaacaatggtagaagtagaaaaaactgagtggattggaga |
9595248 |
T |
|
| Q |
236 |
atcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatca |
335 |
Q |
| |
|
|||||| |||||| ||||||||||||||| ||||| ||||||||||| ||||||||| ||||| ||||||||||| |||||||| ||| |||||||| |
|
|
| T |
9595249 |
atcatatagaactaaatcagccaagttgttcatagaggctatcatgaggtggtggcgctttgttgacaattgaaggtgattctttgcaaattttggatca |
9595348 |
T |
|
| Q |
336 |
gcaataagagaat |
348 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
9595349 |
gaaataagagaat |
9595361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 160 - 322
Target Start/End: Original strand, 9562507 - 9562672
Alignment:
| Q |
160 |
ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagc--- |
256 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| ||||||||| |||||||||| || |||| | |||||||||| |||||| || ||| |||||| | |
|
|
| T |
9562507 |
ttgtgagaatattaggagcgtaaagttgtgtctgtgtaacagcggtagaagtagaaaaaaccaaggggattgggaaatcatgctgaacaaactcaccacg |
9562606 |
T |
|
| Q |
257 |
caagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgc |
322 |
Q |
| |
|
| | ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9562607 |
cgaaatgttccaagaggttaccaagaggtggtggcgcttagttgacaattgaaggtgcttctttgc |
9562672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 437
Target Start/End: Complemental strand, 2491726 - 2491317
Alignment:
| Q |
36 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcat---gcagtaaaagatgccatcgcaagagc |
132 |
Q |
| |
|
||||||||||| | |||| || |||||||||||||||| ||||||| ||| ||||| | | || |||| ||| ||||||||||||| ||| ||| |
|
|
| T |
2491726 |
tccaaaggaggcaataacttaaactttctaatggaagggttccacagaaaaaaagaaacgccattaagcaccacgcaacaaaagatgccatcacaatagc |
2491627 |
T |
|
| Q |
133 |
acattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattgg |
232 |
Q |
| |
|
|| |||| || ||| ||| || | |||| ||| || |||||||||||||||| || ||||||| |||||||||||| || |||| |||||| ||||| |
|
|
| T |
2491626 |
accttaccaacataaatttatgtccatttgtgagattagtaggagggtaaagttgggtctgtgtaataacggtagaagtagaaaaaagcgagggtattgg |
2491527 |
T |
|
| Q |
233 |
agaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttgga |
332 |
Q |
| |
|
||||||| | ||| |||||| |||||||||| ||||||| |||||||| ||||||||| ||||| |||||||| ||||| ||||||||| | ||| |
|
|
| T |
2491526 |
ggaatcatgatgaaccaactcacccaagttgttttttgaggttaccatgaggtggtggcgctttgttgacaattgaagatgcttttttgcgaatttagga |
2491427 |
T |
|
| Q |
333 |
tcagcaataagagaatnnnnnnncttacagaggcatcgaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaa |
427 |
Q |
| |
|
|||| ||| | ||||| |||||| ||||||||||| || ||||||| | |||| ||||| ||||||||||| |||||||| || ||| |
|
|
| T |
2491426 |
tcagaaattaaagaattgaaaaacttacaaaggcatcgaagctgtaccagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaaaggaa |
2491327 |
T |
|
| Q |
428 |
gagtgggaag |
437 |
Q |
| |
|
|||| ||||| |
|
|
| T |
2491326 |
gagttggaag |
2491317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 36 - 438
Target Start/End: Complemental strand, 2474749 - 2474346
Alignment:
| Q |
36 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagtaaaagatgccatcgcaagagcaca |
135 |
Q |
| |
|
||||||||||| | |||| || | |||| ||||||||| |||||||| |||||||| ||| |||| ||| ||| | ||||||||||||| |||||||||| |
|
|
| T |
2474749 |
tccaaaggaggcaataacttaaattttccaatggaagggttccacaa-aaataagagccatctttgagcgtgccgcaaaagatgccatcacaagagcaca |
2474651 |
T |
|
| Q |
136 |
ttacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga |
235 |
Q |
| |
|
||| | ||||| || || | | | | |||||||||||||||||||||| ||| ||| | |||| | || |||| |||||| ||||| || |
|
|
| T |
2474650 |
acacgaaggcgtagttatgtccaagtttgatactattaggagggtaaagttgtgtctgtataatga---tagacttagaaaaaagcgagggtattgggga |
2474554 |
T |
|
| Q |
236 |
atcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatca |
335 |
Q |
| |
|
|||||||| ||| ||||| | |||| ||| | ||| |||| |||||||| ||||||||| |||||||||||||||| |||||||||||| | |||| |
|
|
| T |
2474553 |
atcatactgaacgtactcacctaagtagttgctagatgttaccatgaggtggtggcgcttgtttgataattgaaggtgtttctttgcgaatctgggattg |
2474454 |
T |
|
| Q |
336 |
gcaataagagaatnnnnnnncttacagaggcatcgaagtt-----ggtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagag |
430 |
Q |
| |
|
| ||| | ||||| |||||||||||| ||||| | |||||||||| ||||| ||||| |||||||||||| |||| ||| ||| |||||| |
|
|
| T |
2474453 |
gaaattaaagaattaaagaacttacagaggcaccgaagctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagag |
2474354 |
T |
|
| Q |
431 |
tgggaagt |
438 |
Q |
| |
|
|||||||| |
|
|
| T |
2474353 |
tgggaagt |
2474346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 437
Target Start/End: Complemental strand, 2476159 - 2475887
Alignment:
| Q |
170 |
attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaa |
269 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| || || | || |||||||| ||||||||| |||||||||| | |||| | | |
|
|
| T |
2476159 |
attaggagggtaaagttgtgtctgtgtaacaacggttgaagtagaaaatacggatgggattggcgaatcatacagaactaactcacgtgatatgttacga |
2476060 |
T |
|
| Q |
270 |
gaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatc |
369 |
Q |
| |
|
| || |||||||| ||||||||| ||||| ||||||||||| |||||||||||| | ||||||| ||||||||||| |||||| ||||| | |
|
|
| T |
2476059 |
cattttcgcatgaggtggtggcgctttgttgacaattgaaggtgtttctttgcgaatttaggatcagaaataagagaattgaaaaacttacaaaggcacc |
2475960 |
T |
|
| Q |
370 |
gaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
437 |
Q |
| |
|
|||| || ||||||||| || |||||| ||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
2475959 |
gaagctgtacgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaagggaagagtgggaag |
2475887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 9566321 - 9566432
Alignment:
| Q |
112 |
aaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagt |
211 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| |||| | || |||| | | | |||| ||||||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
9566321 |
aaaagatgccatcgcaagagcacgttaagtccacatagttgcgtctaattctgatactattgggagggtaaagttgtgtctgtgtaaaaaccgtagaagt |
9566420 |
T |
|
| Q |
212 |
tgataaaatcga |
223 |
Q |
| |
|
||||||||||| |
|
|
| T |
9566421 |
agataaaatcga |
9566432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 273 - 421
Target Start/End: Original strand, 755292 - 755445
Alignment:
| Q |
273 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
372 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| |||||||| || || ||||||||| ||||||||| ||||||||||| |||||||||||| || | |
|
|
| T |
755292 |
gttaacatgaggtggtggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaagacttacagaggcaccgca |
755391 |
T |
|
| Q |
373 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcga |
421 |
Q |
| |
|
| || ||||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
755392 |
gctgtccgagtaatttgatgggaagcctacaaagaatctcaggcaggacatcga |
755445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 2501835 - 2501751
Alignment:
| Q |
8 |
aaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
92 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | |||| || ||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
2501835 |
aaagcttagtgatgtccattcgtgattctccaaaggaggcaataacttaaactttgtaatggaagggttccacaagaaataagaa |
2501751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 2659519 - 2659752
Alignment:
| Q |
8 |
aaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatg |
107 |
Q |
| |
|
|||||||||| ||| |||| |||||||| ||||||||| | |||| || |||||||||||||||| ||||| || |||||||||||| || ||| | |
|
|
| T |
2659519 |
aaagcttagtaatgaccatttgtgattccgcaaaggaggcaataacttaaactttctaatggaagggttccataagaaataagaaccattattgagctta |
2659618 |
T |
|
| Q |
108 |
cagtaaaagatgccatcgcaagagcacattac---gtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacgg |
204 |
Q |
| |
|
| |||| |||||||||||||||| ||| | ||| | ||| | || | |||| ||| |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
2659619 |
ccacaaaatatgccatcgcaagagctcatcatcaggtcgatgcagtgatgtccatttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacgg |
2659718 |
T |
|
| Q |
205 |
tagaagttgataaaatcgaggggattggagaatc |
238 |
Q |
| |
|
||||||| || ||||| || |||||||||||||| |
|
|
| T |
2659719 |
tagaagtagagaaaattgaagggattggagaatc |
2659752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 437
Target Start/End: Original strand, 7334931 - 7335100
Alignment:
| Q |
273 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
372 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||| ||||||| |
|
|
| T |
7334931 |
gttaccatgaggtggtggcgctttgttgacaattgaaggtgcttctttgcgaattttggatcagagataacagaattaaagaacttacagagacatcgaa |
7335030 |
T |
|
| Q |
373 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
437 |
Q |
| |
|
| || ||||||| | |||| ||||| ||||||||||| |||||||| || ||||||| ||||| |
|
|
| T |
7335031 |
gctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaag |
7335100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 437
Target Start/End: Original strand, 9566482 - 9566651
Alignment:
| Q |
273 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
372 |
Q |
| |
|
|||| |||||||| |||||||| ||||| |||||||| || || ||||||||| ||||||||| ||||||||||| ||| |||||||| |||| |
|
|
| T |
9566482 |
gttaacatgaggtgatggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaa |
9566581 |
T |
|
| Q |
373 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
437 |
Q |
| |
|
| || ||||||| ||||||| ||||| ||||||||||| | |||||||||| ||||||| ||||| |
|
|
| T |
9566582 |
gctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaagagtaggaag |
9566651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 2630843 - 2630771
Alignment:
| Q |
170 |
attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac |
242 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| ||| ||||| || |||| ||| |||||||||||||||||| |
|
|
| T |
2630843 |
attaggagggtaaagttgtgtttgtgcaacaatggttgaagtagaaaaaagcgaagggattggagaatcatac |
2630771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 2635294 - 2635214
Alignment:
| Q |
60 |
tttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagtaaaagatgccatcgcaagagcacattacg |
140 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |||| | | |||||||||||||||||||||| ||||| |
|
|
| T |
2635294 |
tttctaatggaagggttccacagaaaataagaaccagctttgagcacaccgctaaagatgccatcgcaagagcacgttacg |
2635214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 437
Target Start/End: Original strand, 7443554 - 7443823
Alignment:
| Q |
173 |
aggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagag |
272 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||| || || | ||| |||||||||||||||| ||| || ||| |||||||| |||| |
|
|
| T |
7443554 |
aggagggtcaagttgtgtttgtgtaacagacgtagaagtagaaaacaccgatgggattggagaatcatgtaaaacaaaatcatgtctgttgttcctagag |
7443653 |
T |
|
| Q |
273 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
372 |
Q |
| |
|
|||| ||||||| ||| |||| | ||| ||||||| ||||||||| ||||| | ||||||| ||| | ||||| |||||||||||| |||| |
|
|
| T |
7443654 |
gttaccatgaggcggtgatgcttggctgaaaattgaaagtgcttcttggcgaaattgggatcagaaattaaagaattgaagaacttacagaggcaccgaa |
7443753 |
T |
|
| Q |
373 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
437 |
Q |
| |
|
|||| ||||||| | |||| ||| | ||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7443754 |
gttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaag |
7443823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 437
Target Start/End: Original strand, 7325065 - 7325226
Alignment:
| Q |
281 |
gaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg---- |
376 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||||||| || ||||||| ||| | ||||| |||||||||||| ||||| || |
|
|
| T |
7325065 |
gaggtggtggcgcttagttgataattgaagatgtttctttgcgaaagtgggatcagaaattaaagaattgaagaacttacagaggcaccgaagctgtatg |
7325164 |
T |
|
| Q |
377 |
-gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
437 |
Q |
| |
|
||||||| | |||| ||| | |||||||||||| | ||||||||| ||||||| ||||| |
|
|
| T |
7325165 |
agtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaag |
7325226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 755176 - 755246
Alignment:
| Q |
169 |
tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatca |
239 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| |||||||| || ||||| || |||||||| |||||| |
|
|
| T |
755176 |
tattgggagggtaaagttgtgtctgtgtaaaaacagtagaagtagaaaaaatggatgggattggggaatca |
755246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 459
Target Start/End: Complemental strand, 2634905 - 2634861
Alignment:
| Q |
415 |
acatcgaagagaagagtgggaagtggcggcggagatgttatggtt |
459 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2634905 |
acatcgaacggaagagtcggaagtggcggcggagatgttatggtt |
2634861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 2630971 - 2630909
Alignment:
| Q |
30 |
tgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
92 |
Q |
| |
|
||||| ||||| ||||| | |||| || |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
2630971 |
tgattttccaatggaggcaataacttaaactttctaatggaagggttccacaagaaataagaa |
2630909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 2644902 - 2644972
Alignment:
| Q |
172 |
taggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggagaatcatac |
242 |
Q |
| |
|
||||| ||||||||||||| |||||||||| ||||||||| || ||| || |||||||| ||||||||| |
|
|
| T |
2644902 |
taggaaggtaaagttgtgtttgtgtaacaatggtagaagtagaaaaaggtgaagggattggggaatcatac |
2644972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 7324862 - 7324932
Alignment:
| Q |
63 |
ctaatggaaggattccacaacaaataagaaccagcttttagcatgcagtaaaagatgccatcgcaagagca |
133 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||| ||||||| |||| |||||||| |||||||| |
|
|
| T |
7324862 |
ctaatggaagggttccacaaataataagaaccaactttgagcatgcccaaaaaaatgccatcacaagagca |
7324932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 2644763 - 2644819
Alignment:
| Q |
36 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
92 |
Q |
| |
|
||||||||||| | |||| || ||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
2644763 |
tccaaaggaggcaataacttaaactttctaacggaagggttccacaagaaataagaa |
2644819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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