View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5309-Insertion-8 (Length: 668)

Name: NF5309-Insertion-8
Description: NF5309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5309-Insertion-8
NF5309-Insertion-8
[»] chr2 (2 HSPs)
chr2 (8-668)||(42634393-42635053)
chr2 (32-260)||(42639825-42640053)


Alignment Details
Target: chr2 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 8 - 668
Target Start/End: Complemental strand, 42635053 - 42634393
Alignment:
Q  8 caaatttcacctagtactcctggtcctagcaatgatgtcaacgtggctgacattgttacacaagaattcttcaatagtataattgatcaagctggtccta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  42635053 caaatttcacctagtactcctggtcctagcaatgatgtcaacgtggctgacattgttacacaagaattcttcaatagtataattgatcaagctgattcta 42634954  T
Q  108 gttgtgcaggaaagaacttctactcaagagctgcttttcttgatgccctcggttcttataatcagtttggcagggctggttctgtagatgactctaaacg 207  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  42634953 gttgtgcaggaaagaacttctattcaagagctgtttttcttgatgccctcggttcttataatcagtttggtagggttggttctgtagatgactccaaacg 42634854  T
Q  208 cgaaatcgcagctgcttttgcacatttcactcatgaaactggacgtaagtattataactcatttaaagaatcaatcactatttagttttcatgcatattg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42634853 cgaaatcgcagctgcttttgcacatttcactcatgaaactggacgtaagtattataactcatttaaagaatcaatcacaatttagttttcatgcatattg 42634754  T
Q  308 attactaaaattaacaaaattttagaatggcatttaaaatttaatattttctaccatgccagtttcaagacaatttcagtgattaaattgattgaactaa 407  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42634753 attactaaaattaacaaaattttagaatggtatttaaaatttaatattttctaccatgccagtttcaagacaatttcagtgattaaattgattgaactaa 42634654  T
Q  408 gaactaatatgatcaatggttattattttcaataatcatttgagaatttagttaatnnnnnnnntatatttgtcaaaaacctttacaatttcaatgaact 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| ||||    
T  42634653 gaactaatatgatcaatggttattattttcaataatcatttgagaatttagttaataaaaaaaatatatttgtcaaaaacctttacaatttcaattaact 42634554  T
Q  508 tttattagcatttcagcttggtcaacagttgtttgagactaaccggaccacatttagttcaattcttgttctagcgtataagctatatgggtttggctag 607  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42634553 tttattagcatttcagcttggtcaacagttgtttgagactaaccagacctcatttagttcaattcttgttctagcgtataagctatat-ggtttggctag 42634455  T
Q  608 gtttaattttgtgcacacatacatacagtac--gtataagactaataactaaatttcacgttt 668  Q
    ||||||||||||||| ||||||||||| |||   |||||||||||||||||||||||||||||    
T  42634454 gtttaattttgtgcatacatacataca-tacatctataagactaataactaaatttcacgttt 42634393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 32 - 260
Target Start/End: Complemental strand, 42640053 - 42639825
Alignment:
Q  32 cctagcaatgatgtcaacgtggctgacattgttacacaagaattcttcaatagtataattgatcaagctggtcctagttgtgcaggaaagaacttctact 131  Q
    |||| ||||||||  || |||||||||||  |||||||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||     
T  42640053 cctaacaatgatgctaatgtggctgacatccttacacaagatttcttcaatcgtataattgatcaagctgattctagttgtgcaggaaagaacttctaca 42639954  T
Q  132 caagagctgcttttcttgatgccctcggttcttataatcagtttggcagggctggttctgtagatgactctaaacgcgaaatcgcagctgcttttgcaca 231  Q
    |||||||||||||||| |||||||||  |||||||||||||||||| ||| |||| ||| | |||||||| ||||| ||  | || ||||||||||| ||    
T  42639953 caagagctgcttttctcgatgccctcaattcttataatcagtttggtaggtctggatctttggatgactccaaacgtgaggttgctgctgcttttgctca 42639854  T
Q  232 tttcactcatgaaactggacgtaagtatt 260  Q
    |||||| ||||||||||||||||||||||    
T  42639853 tttcacacatgaaactggacgtaagtatt 42639825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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