View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5310-Insertion-1 (Length: 641)

Name: NF5310-Insertion-1
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5310-Insertion-1
NF5310-Insertion-1
[»] chr1 (21 HSPs)
chr1 (10-554)||(38265950-38266503)
chr1 (13-112)||(4868430-4868528)
chr1 (604-641)||(38265913-38265950)
chr1 (11-59)||(30259480-30259528)
chr1 (13-78)||(4033992-4034056)
chr1 (18-75)||(6262773-6262830)
chr1 (21-74)||(17420241-17420294)
chr1 (21-74)||(52865913-52865966)
chr1 (11-111)||(27140506-27140606)
chr1 (22-78)||(33185933-33185989)
chr1 (11-70)||(11211146-11211205)
chr1 (11-69)||(4699599-4699657)
chr1 (11-101)||(32515393-32515483)
chr1 (11-69)||(33108606-33108664)
chr1 (16-57)||(4768825-4768866)
chr1 (11-52)||(35017604-35017645)
chr1 (11-43)||(625600-625632)
chr1 (16-52)||(2522662-2522698)
chr1 (13-77)||(15515571-15515635)
chr1 (20-64)||(47917273-47917317)
chr1 (30-78)||(49692027-49692075)
[»] chr4 (10 HSPs)
chr4 (22-111)||(2996612-2996701)
chr4 (11-74)||(23819117-23819180)
chr4 (11-78)||(27123327-27123394)
chr4 (15-133)||(29375935-29376052)
chr4 (11-59)||(11264329-11264377)
chr4 (11-78)||(6428046-6428113)
chr4 (22-75)||(44374235-44374288)
chr4 (24-69)||(53034783-53034828)
chr4 (11-59)||(6987735-6987783)
chr4 (14-78)||(27725245-27725309)
[»] chr3 (15 HSPs)
chr3 (322-423)||(16847507-16847608)
chr3 (11-74)||(43115084-43115147)
chr3 (21-73)||(14598533-14598585)
chr3 (15-75)||(37273166-37273226)
chr3 (10-77)||(36200123-36200190)
chr3 (13-59)||(29771868-29771914)
chr3 (11-112)||(20192547-20192648)
chr3 (21-74)||(37155039-37155092)
chr3 (21-74)||(37200394-37200447)
chr3 (11-70)||(2152161-2152220)
chr3 (11-74)||(3015822-3015885)
chr3 (11-78)||(24281075-24281142)
chr3 (11-74)||(43397855-43397918)
chr3 (10-69)||(48286794-48286853)
chr3 (11-51)||(21862177-21862217)
[»] chr8 (10 HSPs)
chr8 (11-75)||(14949894-14949958)
chr8 (11-75)||(25869244-25869308)
chr8 (11-75)||(4055594-4055658)
chr8 (11-75)||(7918424-7918488)
chr8 (14-69)||(3161607-3161662)
chr8 (11-64)||(2091791-2091844)
chr8 (11-51)||(5088880-5088920)
chr8 (10-78)||(8629483-8629551)
chr8 (17-65)||(9572904-9572952)
chr8 (11-63)||(12361220-12361272)
[»] chr2 (13 HSPs)
chr2 (11-75)||(43065428-43065492)
chr2 (15-69)||(10285892-10285946)
chr2 (316-423)||(24203317-24203424)
chr2 (13-74)||(14299610-14299671)
chr2 (11-59)||(1939326-1939374)
chr2 (11-59)||(34652030-34652078)
chr2 (11-75)||(41817196-41817260)
chr2 (11-74)||(9878661-9878724)
chr2 (11-74)||(32821837-32821900)
chr2 (11-74)||(37034050-37034113)
chr2 (16-78)||(33525942-33526004)
chr2 (11-59)||(16947054-16947102)
chr2 (11-59)||(17017719-17017767)
[»] chr6 (15 HSPs)
chr6 (14-78)||(33887861-33887925)
chr6 (11-78)||(2460126-2460193)
chr6 (19-78)||(4080952-4081011)
chr6 (11-74)||(9027606-9027669)
chr6 (11-74)||(30863274-30863337)
chr6 (16-57)||(2160933-2160974)
chr6 (11-112)||(10031760-10031861)
chr6 (11-59)||(9667979-9668027)
chr6 (13-52)||(31583709-31583748)
chr6 (11-64)||(3528831-3528884)
chr6 (11-52)||(27909639-27909680)
chr6 (13-106)||(32171330-32171423)
chr6 (15-63)||(733167-733215)
chr6 (30-78)||(31594359-31594407)
chr6 (11-43)||(34404117-34404149)
[»] chr7 (7 HSPs)
chr7 (13-72)||(39568305-39568364)
chr7 (16-103)||(33894660-33894747)
chr7 (22-69)||(44808197-44808244)
chr7 (11-57)||(42281510-42281556)
chr7 (21-63)||(45078316-45078358)
chr7 (11-64)||(47395087-47395140)
chr7 (22-69)||(34035956-34036004)
[»] chr5 (4 HSPs)
chr5 (11-77)||(13604825-13604891)
chr5 (11-51)||(40205076-40205116)
chr5 (11-59)||(29590623-29590671)
chr5 (13-69)||(35963271-35963327)
[»] scaffold0286 (1 HSPs)
scaffold0286 (16-57)||(16143-16184)
[»] scaffold0012 (1 HSPs)
scaffold0012 (21-73)||(38630-38682)


Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 10 - 554
Target Start/End: Complemental strand, 38266503 - 38265950
Alignment:
Q  10 tagagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctcataaagactcttaagtgcttatgtcaataaat 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38266503 tagagcttatagaaataagttgaaaacaaattatgaacatgtcgtaagttattttcataaactctctcataaagactcttaagtgcttatgtcaataaat 38266404  T
Q  110 aaagttcaaacaagggaatccaaacagatgcaatgttcctcaataggacaagcaagtccaacatacaatacaaataaaacataccttgaactgcattcca 209  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38266403 aaagtttaaacaagggaatccaaacagatgcaatgttcctcaataggacaagcaagtccaacatacaatacaaataaaacataccttgaactgcattcca 38266304  T
Q  210 ctattaagataatccagtactaaagttgtaaagataacaaacaataaagatcataaaatccactaccaactaaagttgcattgcaagactacaatgataa 309  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38266303 ctattaagataatccagtactaaagttgtaaatataacaaacaataaagatcataaaatccactaccaactaaagttgcattgcaagactacaatgatag 38266204  T
Q  310 ccatgaagaaactatcaacagaggaagcatagaaagaagaccatagcacacaaaagaatcaatactttcaaatgtattcactttgctaacaatagtactc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38266203 ccatgaagaaactatcaacagaggaagcatagaaagaagaccatagcacacaaaagaatcaatactttcaaatgtattcactttgctaacaatagtactc 38266104  T
Q  410 catagttgtccaactataccatcctcatca---------tcatggtttctcaaaattcttctatcattgtcagcatcgtcggagattgattgatccaaag 500  Q
    ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38266103 catagttgtccaactataccatcctcatcatcatcatcatcatggtttctcaaaattcttctatcattgtcagcatcgtcggagattgattgatccaaag 38266004  T
Q  501 acattatagttttagctcttcccccaaatttataggctgaatcggtgtctattg 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38266003 acattatagttttagctcttcccccaaatttataggctgaatcggtgtctattg 38265950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 4868430 - 4868528
Alignment:
Q  13 agcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctcataaagactcttaagtgcttatgtcaataaataaa 112  Q
    |||||||  ||||||||||||||||| |||| |||||||| ||||||  ||||||||||||||||| | || |||  |||||| |||||||||| |||||    
T  4868430 agcttatgtaaataagttgaaaacaacttattgacatgtcataagtt-gtttcataaactctctcaaacagtctcacaagtgcctatgtcaatagataaa 4868528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 604 - 641
Target Start/End: Complemental strand, 38265950 - 38265913
Alignment:
Q  604 gcgttgataaaggtcctttctataataaggagttgatt 641  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38265950 gcgttgataaaggtcctttctataataaggagttgatt 38265913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 30259528 - 30259480
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagtt 59  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  30259528 agagcttatggaaataagttgaaaacaatttattgacatgtcgtaagtt 30259480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 4034056 - 4033992
Alignment:
Q  13 agcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    ||||||| ||||||||||||| ||| || ||||||| ||| |||||||||||||||| ||||||||    
T  4034056 agcttatggaaataagttgaagacagat-atggacaagtcataagttattttcataagctctctca 4033992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 6262773 - 6262830
Alignment:
Q  18 atagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctc 75  Q
    ||||||||||| | ||||||| |||||||||| || |||||||||||||||| |||||    
T  6262773 atagaaataagcttaaaacaacttatggacatatcataagttattttcataagctctc 6262830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 17420241 - 17420294
Alignment:
Q  21 gaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    |||||||||||||||||| ||||||||||||  |||||| ||||||||| ||||    
T  17420241 gaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctct 17420294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 52865966 - 52865913
Alignment:
Q  21 gaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    |||||||||||||||||||||||||| | | |||||| ||||||||||| ||||    
T  52865966 gaaataagttgaaaacaaattatggaaacggcgtaagctattttcataagctct 52865913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 27140506 - 27140606
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctcataaagactcttaagtgcttatgtcaataaata 110  Q
    |||||||||  ||||||| ||||||||| ||||||||||||| |||| | ||| | |||||||||||| | |||||   || || ||||||||||| |||    
T  27140506 agagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactctctcaaagagacttacaattgtttatgtcaatagata 27140605  T
Q  111 a 111  Q
    |    
T  27140606 a 27140606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 33185989 - 33185933
Alignment:
Q  22 aaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    ||||||||||||||||  ||||||| ||||| ||| || ||||||||||||||||||    
T  33185989 aaataagttgaaaacaggttatggaaatgtcataatttgttttcataaactctctca 33185933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 11211146 - 11211205
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaa 70  Q
    |||| |||| |||||||||| ||||||| |||||||||||   |||||||||||||||||    
T  11211146 agagtttatggaaataagttaaaaacaacttatggacatgctataagttattttcataaa 11211205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 4699657 - 4699599
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataa 69  Q
    |||||||||||||||||| | ||||||  ||||| ||||||| |||||| |||||||||    
T  4699657 agagcttatagaaataagctaaaaacagcttatgaacatgtcataagttgttttcataa 4699599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 32515483 - 32515393
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctcataaagactcttaagtgcttatgt 101  Q
    |||||||||||| ||||||||||||||| |||| |||||||| || | | ||| ||||| ||||| || | || |||  ||||||||||||    
T  32515483 agagcttatagatataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgt 32515393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 33108664 - 33108606
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataa 69  Q
    ||||||||| |||||||||||||||||| |||||| |||| | | |||| |||||||||    
T  33108664 agagcttatggaaataagttgaaaacaacttatggtcatggcatgagttgttttcataa 33108606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 4768866 - 4768825
Alignment:
Q  16 ttatagaaataagttgaaaacaaattatggacatgtcgtaag 57  Q
    |||| |||||||| ||||||||| ||||||||||||||||||    
T  4768866 ttatggaaataagctgaaaacaagttatggacatgtcgtaag 4768825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 35017604 - 35017645
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtc 52  Q
    ||||||||| ||||||||||||||| || |||||||||||||    
T  35017604 agagcttatggaaataagttgaaaataacttatggacatgtc 35017645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 625600 - 625632
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattat 43  Q
    |||||||||||||||||||||||||||| ||||    
T  625600 agagcttatagaaataagttgaaaacaacttat 625632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 2522662 - 2522698
Alignment:
Q  16 ttatagaaataagttgaaaacaaattatggacatgtc 52  Q
    |||| |||||||||||||||||||||| |||||||||    
T  2522662 ttatggaaataagttgaaaacaaattacggacatgtc 2522698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 15515571 - 15515635
Alignment:
Q  13 agcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctc 77  Q
    ||||||| ||||||| ||||||| |   ||| |||||||| |||||| |||||||||||||||||    
T  15515571 agcttatggaaataaattgaaaatagcgtattgacatgtcataagttgttttcataaactctctc 15515635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 47917273 - 47917317
Alignment:
Q  20 agaaataagttgaaaacaaattatggacatgtcgtaagttatttt 64  Q
    ||||||||||||||||||| ||||| ||||||| |||||| ||||    
T  47917273 agaaataagttgaaaacaacttatgaacatgtcataagttttttt 47917317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 49692075 - 49692027
Alignment:
Q  30 tgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    |||||||||| |||||||||||| |||| |||||||||||  |||||||    
T  49692075 tgaaaacaaactatggacatgtcataagctattttcataagttctctca 49692027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 2996612 - 2996701
Alignment:
Q  22 aaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctcataaagactcttaagtgcttatgtcaataaataa 111  Q
    |||||||||||||| |  ||||||||||||| |||||| ||||||||| |||||||| | || |||  ||||||||||||||||||||||    
T  2996612 aaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataa 2996701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 23819117 - 23819180
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    |||||||||||||||||| ||||||||| ||||||||||||| |||| | ||||| ||||||||    
T  23819117 agagcttatagaaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactct 23819180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 27123394 - 27123327
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    ||||||||| |||||||||||||||||| |||  |||||||| |||||| ||| ||||| ||||||||    
T  27123394 agagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctca 27123327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 29375935 - 29376052
Alignment:
Q  15 cttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctcataaagactcttaagtgcttatgtcaataaataaagt 114  Q
    ||||| ||||||||||||||||||| ||||||| |||| |||| | ||| ||||| |||||| | | ||  ||  ||||||||||||||||| || ||||    
T  29375935 cttatggaaataagttgaaaacaaaatatggacctgtcataagctgtttccataagctctctgaaatagcgtcacaagtgcttatgtcaatagat-aagt 29376033  T
Q  115 tcaaacaagggaatccaaa 133  Q
    ||||| |||  ||||||||    
T  29376034 tcaaataagccaatccaaa 29376052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 11264329 - 11264377
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagtt 59  Q
    ||||||||| |||||||||||||||||  ||||||||||||| ||||||    
T  11264329 agagcttatggaaataagttgaaaacagtttatggacatgtcataagtt 11264377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 6428046 - 6428113
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    ||||||||| |||||| | | ||| ||| ||||||||||||| |||||| ||||||||| ||||||||    
T  6428046 agagcttatggaaatatgcttaaatcaacttatggacatgtcataagttgttttcataatctctctca 6428113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 44374235 - 44374288
Alignment:
Q  22 aaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctc 75  Q
    ||||| ||||||||||| || |  |||||||||||||| |||||||||||||||    
T  44374235 aaatatgttgaaaacaattttttaacatgtcgtaagttgttttcataaactctc 44374288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 53034828 - 53034783
Alignment:
Q  24 ataagttgaaaacaaattatggacatgtcgtaagttattttcataa 69  Q
    ||||| ||||||||| ||||| |||||||||||||| |||||||||    
T  53034828 ataagctgaaaacaatttatgaacatgtcgtaagttgttttcataa 53034783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 6987783 - 6987735
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagtt 59  Q
    ||||||||| ||||||||||||||| |  ||||||||||||| ||||||    
T  6987783 agagcttatggaaataagttgaaaatagtttatggacatgtcataagtt 6987735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 27725245 - 27725309
Alignment:
Q  14 gcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    |||||| ||||| | ||||||| |  ||||||||||||| |||||||||| ||||| ||||||||    
T  27725245 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctca 27725309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 322 - 423
Target Start/End: Complemental strand, 16847608 - 16847507
Alignment:
Q  322 tatcaacagaggaagcatagaaagaagaccatagcacacaaaagaatcaatactttcaaatgtattcactttgctaacaatagtactccatagttgtcca 421  Q
    |||||||||||||  ||| |||| ||| |||||||| ||||||| |||||  |||||||| |||||||||||||| | ||||||  | ||||||||||||    
T  16847608 tatcaacagaggagccattgaaacaaggccatagcaaacaaaagcatcaacgctttcaaaagtattcactttgctgagaatagtttttcatagttgtcca 16847509  T
Q  422 ac 423  Q
    ||    
T  16847508 ac 16847507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 43115084 - 43115147
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    ||||||||| |||||||| ||||||||| ||||||||||||| |||||| ||| ||||||||||    
T  43115084 agagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactct 43115147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 14598585 - 14598533
Alignment:
Q  21 gaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactc 73  Q
    ||||||||||| |||||| ||||||||||||| |||||||||| |||||||||    
T  14598585 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 14598533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 37273166 - 37273226
Alignment:
Q  15 cttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctc 75  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||| ||| ||||| |||||    
T  37273166 cttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctc 37273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 36200123 - 36200190
Alignment:
Q  10 tagagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctc 77  Q
    ||||||| || |||||||| ||||||||| ||||||||||||| |||||| ||| || ||||||||||    
T  36200123 tagagctcatggaaataagctgaaaacaacttatggacatgtcataagttgtttacaaaaactctctc 36200190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 29771868 - 29771914
Alignment:
Q  13 agcttatagaaataagttgaaaacaaattatggacatgtcgtaagtt 59  Q
    ||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  29771868 agcttatggaaataagttgaaaacaacttatggacatgtcctaagtt 29771914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 20192648 - 20192547
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctcataaagactcttaagtgcttatgtcaataaata 110  Q
    ||||||||| ||||| |||||||||||  ||||||||||||| |||| | |||  |||| |||||||||| ||  |   ||||||||||||||||| |||    
T  20192648 agagcttatggaaatgagttgaaaacagcttatggacatgtcataagctgtttctataagctctctcatacagtgtaagaagtgcttatgtcaatagata 20192549  T
Q  111 aa 112  Q
    ||    
T  20192548 aa 20192547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 37155039 - 37155092
Alignment:
Q  21 gaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    ||||||||| |||||||| ||||||||||||  |||||||||| ||||||||||    
T  37155039 gaaataagtagaaaacaacttatggacatgtaataagttatttccataaactct 37155092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 37200394 - 37200447
Alignment:
Q  21 gaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    ||||||||| |||||||| ||||||||||||  |||||||||| ||||||||||    
T  37200394 gaaataagtagaaaacaacttatggacatgtaataagttatttccataaactct 37200447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 2152220 - 2152161
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaa 70  Q
    |||||||||||||| ||||||||||||  ||| | ||||||| |||||| ||||||||||    
T  2152220 agagcttatagaaacaagttgaaaacagcttacgaacatgtcataagttgttttcataaa 2152161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 3015885 - 3015822
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    |||||||||  ||||||| ||||||||  ||||||||||||| |||||| ||||||||| ||||    
T  3015885 agagcttattaaaataagatgaaaacatcttatggacatgtcataagttgttttcataagctct 3015822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 24281075 - 24281142
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    |||||||||  || |||||||||||||| ||||||| || || |||||| ||||||||| ||||||||    
T  24281075 agagcttatgaaagtaagttgaaaacaacttatggagatatcataagttgttttcataagctctctca 24281142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 43397855 - 43397918
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    ||||||||| ||| |||||||||||||| ||||||||||||  |||| |||||  |||||||||    
T  43397855 agagcttatggaagtaagttgaaaacaatttatggacatgttataagctatttctataaactct 43397918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 48286853 - 48286794
Alignment:
Q  10 tagagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataa 69  Q
    ||||||||||||||||||| ||| |||   |||||||||||||||| ||| |||||||||    
T  48286853 tagagcttatagaaataagctgataacggtttatggacatgtcgtaggttgttttcataa 48286794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 21862217 - 21862177
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgt 51  Q
    ||||||||| |||||||| ||||||||| ||||||||||||    
T  21862217 agagcttatggaaataagctgaaaacaacttatggacatgt 21862177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 14949894 - 14949958
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctc 75  Q
    |||| ||||||||||||| ||||||||  ||||||||||||| |||||||||||||||| |||||    
T  14949894 agagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctc 14949958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 25869308 - 25869244
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctc 75  Q
    |||| |||| |||||||| ||||||||| ||||||||||||| |||||||||| |||| ||||||    
T  25869308 agagtttatggaaataagctgaaaacaacttatggacatgtcataagttatttccatagactctc 25869244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 4055658 - 4055594
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctc 75  Q
    ||||||||  |||||||| ||||||||  ||||||||||||| ||||||||||  ||||||||||    
T  4055658 agagcttaaggaaataagctgaaaacagtttatggacatgtcataagttatttctataaactctc 4055594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 7918488 - 7918424
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctc 75  Q
    ||||||||| ||||||||||| |||||  ||||| ||||||| |||||| ||||||||| |||||    
T  7918488 agagcttattgaaataagttggaaacagcttatgaacatgtcttaagttgttttcataagctctc 7918424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 3161662 - 3161607
Alignment:
Q  14 gcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataa 69  Q
    ||||||| ||||||| ||||||||  ||||| ||||||| ||||||||||||||||    
T  3161662 gcttataaaaataagctgaaaacattttatgaacatgtcataagttattttcataa 3161607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 2091791 - 2091844
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttatttt 64  Q
    ||||| |||||||||||||||||||||| ||||||| || || |||||| ||||    
T  2091791 agagcatatagaaataagttgaaaacaacttatggatatatcataagttgtttt 2091844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 5088880 - 5088920
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgt 51  Q
    ||||||||| |||||||||||||||||  ||||||||||||    
T  5088880 agagcttattgaaataagttgaaaacagcttatggacatgt 5088920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 8629483 - 8629551
Alignment:
Q  10 tagagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    ||||||||||| | | ||||||||||||| |||||  |||||| |||||| |||||||||  |||||||    
T  8629483 tagagcttataaatagaagttgaaaacaacttatgatcatgtcataagttgttttcataagttctctca 8629551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 9572904 - 9572952
Alignment:
Q  17 tatagaaataagttgaaaacaaattatggacatgtcgtaagttattttc 65  Q
    |||||| ||||| | ||||||| ||||||||||||| ||||||||||||    
T  9572904 tatagatataaggtaaaaacaacttatggacatgtcataagttattttc 9572952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 12361220 - 12361272
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattt 63  Q
    |||||| || |||||||||||||||||  ||||||||||||| |||| |||||    
T  12361220 agagctaatggaaataagttgaaaacagcttatggacatgtcataagctattt 12361272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 43065492 - 43065428
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctc 75  Q
    ||||||||| |||||||| ||||||||| ||||||||||||| |||||| ||||||||| |||||    
T  43065492 agagcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctctc 43065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 10285892 - 10285946
Alignment:
Q  15 cttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataa 69  Q
    ||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  10285892 cttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataa 10285946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 316 - 423
Target Start/End: Complemental strand, 24203424 - 24203317
Alignment:
Q  316 agaaactatcaacagaggaagcatagaaagaagaccatagcacacaaaagaatcaatactttcaaatgtattcactttgctaacaatagtactccatagt 415  Q
    ||||| |||||| ||||||| ||| |||  ||| |||||||| ||||||| ||||   |||||||| |||||||||||||| |  |||||| |||| |||    
T  24203424 agaaattatcaagagaggaaccattgaaccaaggccatagcaaacaaaagtatcagcgctttcaaaagtattcactttgctgattatagtattccacagt 24203325  T
Q  416 tgtccaac 423  Q
    ||||||||    
T  24203324 tgtccaac 24203317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 14299671 - 14299610
Alignment:
Q  13 agcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    |||||||||||||||| |||||||||  |||||| ||||| |||||| ||| ||||||||||    
T  14299671 agcttatagaaataagctgaaaacaatgtatggatatgtcataagttgtttccataaactct 14299610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 1939374 - 1939326
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagtt 59  Q
    ||||||||| |||||||||||||||||  ||||||||||||| ||||||    
T  1939374 agagcttatggaaataagttgaaaacagcttatggacatgtcataagtt 1939326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 34652078 - 34652030
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagtt 59  Q
    ||||||||| |||||||||||||||||  ||||||||||||| ||||||    
T  34652078 agagcttatggaaataagttgaaaacagcttatggacatgtcataagtt 34652030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 41817196 - 41817260
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctc 75  Q
    ||||||||| |||||||| ||||||||||||||  ||||||| |||| | |||||||||| ||||    
T  41817196 agagcttatggaaataagctgaaaacaaattatcaacatgtcataagatgttttcataaattctc 41817260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 9878724 - 9878661
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    |||||||  |||||||||| |||||||| ||||||||||||| |||||| ||| ||||| ||||    
T  9878724 agagcttgaagaaataagtcgaaaacaacttatggacatgtcataagttgtttccataagctct 9878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 32821837 - 32821900
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    |||||||||||||||||  ||||||||  ||||||||||||| |||||| |||  |||||||||    
T  32821837 agagcttatagaaataaactgaaaacagcttatggacatgtcataagttgtttctataaactct 32821900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 37034050 - 37034113
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    |||||||||||||||||||||||||||| ||||  ||||||| |||| | ||| ||||| ||||    
T  37034050 agagcttatagaaataagttgaaaacaatttataaacatgtcttaagctgtttccataatctct 37034113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 33526004 - 33525942
Alignment:
Q  16 ttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    ||||||||||||| ||||| ||| ||||||||||||  |||||| ||| ||| ||||||||||    
T  33526004 ttatagaaataagctgaaaccaacttatggacatgttataagttgtttccatgaactctctca 33525942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 16947054 - 16947102
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagtt 59  Q
    |||||| |||||||||||||||||| || ||||| ||||||| ||||||    
T  16947054 agagctcatagaaataagttgaaaataatttatgaacatgtcataagtt 16947102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 17017719 - 17017767
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagtt 59  Q
    |||||| |||||||||||||||||| || ||||| ||||||| ||||||    
T  17017719 agagctcatagaaataagttgaaaataatttatgaacatgtcataagtt 17017767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 33887861 - 33887925
Alignment:
Q  14 gcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    |||||| |||||||||||||||||| || || ||||||| |||| |||||||||||| |||||||    
T  33887861 gcttatggaaataagttgaaaacaacttgtgaacatgtcataagctattttcataaattctctca 33887925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 2460193 - 2460126
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    ||||||||| |||||||||||||||||| |||  |||||||| |||||| ||| ||||| ||||||||    
T  2460193 agagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctca 2460126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 4080952 - 4081011
Alignment:
Q  19 tagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    |||||||||||||||||||| ||||| ||||| | |||||| |||||||||| |||||||    
T  4080952 tagaaataagttgaaaacaacttatgaacatggcataagttgttttcataaaatctctca 4081011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 9027606 - 9027669
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    |||||||||  ||||||| ||||||||| ||||||||||||| |||||||||| ||||| ||||    
T  9027606 agagcttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctct 9027669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 30863274 - 30863337
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactct 74  Q
    ||||||||||||| |||| ||||||||| ||||| ||||||| |||||| ||||||||| ||||    
T  30863274 agagcttatagaagtaagctgaaaacaacttatgtacatgtcataagttgttttcataagctct 30863337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 2160974 - 2160933
Alignment:
Q  16 ttatagaaataagttgaaaacaaattatggacatgtcgtaag 57  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  2160974 ttatggaaataagttgaaaacaacttatggacatgtcgtaag 2160933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 10031760 - 10031861
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctcataaagactcttaagtgcttatgtcaataaata 110  Q
    ||||||||  |||||||| ||||||||| ||||||| ||||||||||||  |||||||  |||| ||| | || |||  |||||||||||||| || |||    
T  10031760 agagcttaaggaaataagatgaaaacaacttatggatatgtcgtaagttggtttcataggctctttcaaacagtctcacaagtgcttatgtcagtagata 10031859  T
Q  111 aa 112  Q
    ||    
T  10031860 aa 10031861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 9668027 - 9667979
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagtt 59  Q
    ||||||||| |||||||||||||||||  ||||||||||||| ||||||    
T  9668027 agagcttatggaaataagttgaaaacagcttatggacatgtcataagtt 9667979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 31583709 - 31583748
Alignment:
Q  13 agcttatagaaataagttgaaaacaaattatggacatgtc 52  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  31583709 agcttatggaaataagttgaaaacaacttatggacatgtc 31583748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 3528831 - 3528884
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttatttt 64  Q
    |||||||||  ||||||| ||||||||| ||||||||||||| |||||| ||||    
T  3528831 agagcttatgaaaataagatgaaaacaagttatggacatgtcataagttgtttt 3528884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 27909680 - 27909639
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtc 52  Q
    ||||||||| |||||||| ||||||||| |||||||||||||    
T  27909680 agagcttatggaaataagctgaaaacaacttatggacatgtc 27909639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 32171423 - 32171330
Alignment:
Q  13 agcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctcataaagactcttaagtgcttatgtcaata 106  Q
    ||||||| |||||||| |||||| |  || ||||| |||| |||| | ||||||||| |||||||| | || |||  |||||||||||||||||    
T  32171423 agcttatggaaataagctgaaaatagcttctggacttgtcataagctgttttcataagctctctcaaacagtctcgcaagtgcttatgtcaata 32171330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 733215 - 733167
Alignment:
Q  15 cttatagaaataagttgaaaacaaattatggacatgtcgtaagttattt 63  Q
    |||||||||||| | ||||||||| || |||||||||| ||||||||||    
T  733215 cttatagaaatatgctgaaaacaacttgtggacatgtcataagttattt 733167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 31594407 - 31594359
Alignment:
Q  30 tgaaaacaaattatggacatgtcgtaagttattttcataaactctctca 78  Q
    ||||||||||||| ||||||||| |||||| ||| ||||| ||||||||    
T  31594407 tgaaaacaaattaaggacatgtcataagttgtttccataacctctctca 31594359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 34404117 - 34404149
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattat 43  Q
    |||||||||||||||||||||||||||| ||||    
T  34404117 agagcttatagaaataagttgaaaacaacttat 34404149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 39568364 - 39568305
Alignment:
Q  13 agcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaact 72  Q
    |||||| |||||||||  |||||||| ||||||||||||| |||||||||| ||||||||    
T  39568364 agcttacagaaataagccgaaaacaacttatggacatgtcataagttatttccataaact 39568305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 33894660 - 33894747
Alignment:
Q  16 ttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctcataaagactcttaagtgcttatgtca 103  Q
    |||| |||||||| ||||||||| ||||||||||||| || | | ||||||||| ||||| || | || |||  ||||||||||||||    
T  33894660 ttattgaaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtca 33894747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 44808197 - 44808244
Alignment:
Q  22 aaataagttgaaaacaaattatggacatgtcgtaagttattttcataa 69  Q
    ||||||| ||||||||  ||||||||||||| ||||||||||||||||    
T  44808197 aaataagctgaaaacaggttatggacatgtcataagttattttcataa 44808244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 42281556 - 42281510
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaag 57  Q
    |||||||||||||||||| ||||||||||||||  ||||||| ||||    
T  42281556 agagcttatagaaataagctgaaaacaaattatttacatgtcataag 42281510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 45078316 - 45078358
Alignment:
Q  21 gaaataagttgaaaacaaattatggacatgtcgtaagttattt 63  Q
    |||||||||||||||||  ||||||||||||| ||||||||||    
T  45078316 gaaataagttgaaaacagcttatggacatgtcataagttattt 45078358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 47395140 - 47395087
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttatttt 64  Q
    ||||| ||| |||||||||||||||||| ||||  |||||| ||||||||||||    
T  47395140 agagcctatggaaataagttgaaaacaacttataaacatgtagtaagttatttt 47395087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 34035956 - 34036004
Alignment:
Q  22 aaataagttgaaaacaaattatggac-atgtcgtaagttattttcataa 69  Q
    ||||||||||||||||| ||||| || ||||| ||||||||||||||||    
T  34035956 aaataagttgaaaacaacttatgaacaatgtcataagttattttcataa 34036004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 13604891 - 13604825
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactctctc 77  Q
    |||||||||  |||||||||||||||||  |||||||||||| |||| | ||||||||| |||||||    
T  13604891 agagcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataagctctctc 13604825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 40205116 - 40205076
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgt 51  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  40205116 agagcttatagaaataagctgaaaacagattatggacatgt 40205076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 29590671 - 29590623
Alignment:
Q  11 agagcttatagaaataagttgaaaacaaattatggacatgtcgtaagtt 59  Q
    |||| |||| |||||||||||||||||| ||||||||| ||| ||||||    
T  29590671 agagtttatggaaataagttgaaaacaacttatggacaagtcataagtt 29590623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 35963271 - 35963327
Alignment:
Q  13 agcttatagaaataagttgaaaacaaattatggacatgtcgtaagttattttcataa 69  Q
    ||||||| |||||||| ||||||||| ||||||||||||| || | ||||| |||||    
T  35963271 agcttatggaaataagctgaaaacaacttatggacatgtcatacgctatttccataa 35963327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 16143 - 16184
Alignment:
Q  16 ttatagaaataagttgaaaacaaattatggacatgtcgtaag 57  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  16143 ttatggaaataagttgaaaacaacttatggacatgtcgtaag 16184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 38630 - 38682
Alignment:
Q  21 gaaataagttgaaaacaaattatggacatgtcgtaagttattttcataaactc 73  Q
    ||||||||||  |||||| ||||||||||||| |||||||||| |||||||||    
T  38630 gaaataagttagaaacaacttatggacatgtcataagttatttccataaactc 38682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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