View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5310-Insertion-2 (Length: 475)
Name: NF5310-Insertion-2
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5310-Insertion-2 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 8 - 475
Target Start/End: Original strand, 41439765 - 41440232
Alignment:
| Q |
8 |
tcaataagataaggaccaacataagaagcaaaagttttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41439765 |
tcaataagataaggaccaacataagaagcaaaagttttcaacaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaa |
41439864 |
T |
|
| Q |
108 |
ctaacttaagtgtggttactctattgactgcaccacaatcagcttcaagtttttctctaaaaattggaaaagctccaacgacactatctccactatctag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
41439865 |
ctaacttaagtgtggttactctattgactgcaccacaatcagcttcaagtttttctctaaaaattggaaaaactccaatgacactatctccactatctag |
41439964 |
T |
|
| Q |
208 |
ctgaggaatatcctcaaggtctaaggttttcttataaccaaatgctataagtggttccacccaagtgaaagtgagaagactcaaaattccagcagtagaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41439965 |
ctgaggaatatcctcaaggtctaaggttttcttataaccaaatgctataagtggttccacccaagtgaaagtgagaagactcaaaattccagcagtagaa |
41440064 |
T |
|
| Q |
308 |
aaaggggtaacagtgtcactccctttagtcttttttaactccaagggattaacattgccattaccattaccaatatgtgtatcaccattcaaaagaggct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41440065 |
aaaggggtaacagtgtcactccctttagtcttttttaaatccaagggattaacattaccattaccattaccaatatgtgtatcaccattcaaaagaggct |
41440164 |
T |
|
| Q |
408 |
cttgaagagttctttcactttcttcactctcatttctcacacaataccccacataacaaaagaagaaa |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41440165 |
cttgaagagttctttcactttcttcactctcatttttcacacaataccccacataacaaaagaagaaa |
41440232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 41452934 - 41453388
Alignment:
| Q |
8 |
tcaataagataaggaccaacataagaagcaaaagttttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || |||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41452934 |
tcaataagataaggaccaacataagaagcaaaagtgtttaataatgcaagaaaagcagtaaaaagaatctctttccaccctgagattatcaatgacttaa |
41453033 |
T |
|
| Q |
108 |
ctaacttaagtgtggttactctattgactgcaccacaatcagcttcaagtttttctctaaaaattggaaaagctccaacgacactatctccactatctag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
41453034 |
ctaacttaagtgtggttactctattgactgcaccacaatcagcttcaagtttttctctaaaaattggaaaagctcctaccacactatctccactatctag |
41453133 |
T |
|
| Q |
208 |
ctgaggaatatcctcaaggtctaaggttttcttataaccaaatgctataagtggttccacccaagtgaaagtgagaagactcaaaattccagcagtagaa |
307 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41453134 |
ctgaggaacatcctcaaggtctaagtttttcttataaccaaatgctataagtggtcccacccaagtgaaagtgagaagactcaaaattccagcagtagaa |
41453233 |
T |
|
| Q |
308 |
aaaggggtaacagtgtcactccctttagtcttttttaactccaagggattaacattgccattaccattaccaatatgtgtatcaccattcaaaagaggct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41453234 |
aaaggggtaacagtgtcactccctttagtctcttttagctccaagggattaa------cattaccattaccaatatgtgtatcaccattcaaaagaggct |
41453327 |
T |
|
| Q |
408 |
cttgaagagttctttcactttcttcactctcatttctcacacaataccccacataacaaaa |
468 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41453328 |
cttgaaaagtgctatcactttcttcactctcatttttcacacaataccccacataacaaaa |
41453388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 471
Target Start/End: Original strand, 14241918 - 14242370
Alignment:
| Q |
7 |
atcaataagataaggaccaacataagaagcaaaagttttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgactta |
106 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| || | |||| |||||||||||||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
14241918 |
atcaataagataaggaccaacataagtagaaaaagtgtttaccaatgcaagaaaagcagtgataagaatttctttccaccctgagattatcaatgactta |
14242017 |
T |
|
| Q |
107 |
actaacttaagtgtggttactctattgactgcaccacaatcagcttcaagtttttctctaaaaattggaaaagctccaacgacactatctccactatcta |
206 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
14242018 |
accaacttaagtgtggttactctattgattgcaccacaatcagcttcaagtttgtctctgaaaataggaaaagctccaaccacactatctctactatcta |
14242117 |
T |
|
| Q |
207 |
gctgaggaatatcctcaaggtctaaggttttcttataaccaaatgctataagtggttccacccaagtgaaagtgagaagactcaaaattccagcagtaga |
306 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| | || |
|
|
| T |
14242118 |
gctgaggaacatcctcaaggtctaacgtcttcttattgccaaatgctataagtggactcacccaagtgaaggtgagaagactccaaattccagcatttga |
14242217 |
T |
|
| Q |
307 |
aaaaggggtaacagtgtcactccctttagtcttttttaactccaagggattaacattgccattaccattaccaatatgtgtatcaccattcaaaagaggc |
406 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || ||||| || | ||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
14242218 |
aaaaggagtaacagtgtcactccctttagtcttgttcaactctaaag------------cattatcgttaccaacatgtgtatcaccattcaaaagaggc |
14242305 |
T |
|
| Q |
407 |
tcttgaagagttctttcactttcttcactctcatttctcacacaataccccacataacaaaagaa |
471 |
Q |
| |
|
|| |||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
14242306 |
tcgtgaatagtttcatcactttcttcactctcgtttttcacacaataccccacataacaaaagaa |
14242370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 471
Target Start/End: Complemental strand, 14371403 - 14370951
Alignment:
| Q |
7 |
atcaataagataaggaccaacataagaagcaaaagttttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgactta |
106 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||| || | |||| |||| ||||||||| || ||||||||| |||||||||||| || |||||| |
|
|
| T |
14371403 |
atcaataagataagggccaacataagtagaaaaagtgtttaccaatgcaagagaagcagtgataaaaatctcttttttccctgagattatcaaagactta |
14371304 |
T |
|
| Q |
107 |
actaacttaagtgtggttactctattgactgcaccacaatcagcttcaagtttttctctaaaaattggaaaagctccaacgacactatctccactatcta |
206 |
Q |
| |
|
|| || |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
14371303 |
accaatttaagtgtggttactctattgattgcaccacaatcagcttcaagtttgtctctgaaaataggaaaagctccaaccacactatctctactatcta |
14371204 |
T |
|
| Q |
207 |
gctgaggaatatcctcaaggtctaaggttttcttataaccaaatgctataagtggttccacccaagtgaaagtgagaagactcaaaattccagcagtaga |
306 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||| | || |
|
|
| T |
14371203 |
gctgaggaacatcctcaaggtctaacgtcttcttattgccaaatgctataagtggactcacccaagtgaaggtgagaagactccaaaatccagcatttga |
14371104 |
T |
|
| Q |
307 |
aaaaggggtaacagtgtcactccctttagtcttttttaactccaagggattaacattgccattaccattaccaatatgtgtatcaccattcaaaagaggc |
406 |
Q |
| |
|
|||||| | |||||||||||||||||||||| || |||||| || |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14371103 |
aaaaggagcaacagtgtcactccctttagtcgcttgtaactctaa------------accattaccattaccaacatgtgtatcaccattcaaaagaggc |
14371016 |
T |
|
| Q |
407 |
tcttgaagagttctttcactttcttcactctcatttctcacacaataccccacataacaaaagaa |
471 |
Q |
| |
|
|| |||| |||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
14371015 |
tcatgaatagttctatcactttcttcactctcaagtttcacacaataccccacataacaaaagaa |
14370951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 21111351 - 21111625
Alignment:
| Q |
8 |
tcaataagataaggaccaacataagaagcaaaagttttcaagaatgtaagaaaagcagtgaaaagaatctctttccaccctgagattattaatgacttaa |
107 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| | || || |||| ||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
21111351 |
tcaataagttaaggaccaccataagaagcaaaattgtttaacaatgcaagaaaaacagtgaaaagaatatctttccttcctgagattatcaatgacttaa |
21111450 |
T |
|
| Q |
108 |
ctaacttaagtgtggttactctattgactgcaccacaatcagcttcaagtttttctctaaaaattggaaaagctccaacgacactatctccactatctag |
207 |
Q |
| |
|
| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||| |||||||||||| ||||||| |
|
|
| T |
21111451 |
ccaacttaagtgtggtca-----ttgactgcaccacaatcagcttcaagtttttctgaaaaagttggaaaaactcaaaccacactatctccagtatctag |
21111545 |
T |
|
| Q |
208 |
ctgaggaatatcctcaaggtctaaggttttcttataaccaaatgctataagtggttccacccaagtgaaagtgagaagac |
287 |
Q |
| |
|
|| ||| | |||||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21111546 |
ctaagggacatcctcaatgtctaaggctttcttattgccaaatgctataagtggtcccacccaagtgaaagtgagaagac |
21111625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University