View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5310-Insertion-3 (Length: 473)
Name: NF5310-Insertion-3
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5310-Insertion-3 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] scaffold0251 (1 HSPs) |
| |
|
| [»] scaffold0010 (2 HSPs) |
| | |
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| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Original strand, 55794 - 56255
Alignment:
| Q |
8 |
aaatatgcataaataaatgcattgtgatctcattttcttaatttataatatagatataaaatggttgttacaaaagtgtgttctttgggtttgtttaacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55794 |
aaatatgcataaataaatgcattgtgatctcattttcttaatttataatatagatataaaatggttgttacaaaagtgtgttctttgggtttgtttaacc |
55893 |
T |
|
| Q |
108 |
atgttctcatatattaggaccgtttaatggacatgatataattagaatgtgataaactatcaaacttttaggaattctgctattcctctgcacatttcgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
55894 |
atgttctcatatattaggaccgtttaatggacatgagataattagaatgtgataaactatcaaacttttaggaattctgctattcccctacacatttcgc |
55993 |
T |
|
| Q |
208 |
ttccatccagtagctttgtcaaaaatgcccatgcattagttaattaacgtaaatgtaaatttatgcgttagttcacaaacattgtgtcacttaagatacg |
307 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
55994 |
ttccatccagtagctttgctgaaaatgcccatgcgttagttaactaacgtaaatgtaaatttatgcgttagttaacaaacattgtgtcacttaagataca |
56093 |
T |
|
| Q |
308 |
catgtataaagtcctgcttgagttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacc |
407 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56094 |
catgcataaagtcctgcttgagttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacc |
56193 |
T |
|
| Q |
408 |
tccattttccctaatttttcaatccttctttcatacatttagtcatttgcatacatttttca |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56194 |
tccattttccctaatttttcaatccttctttcatacatttagtcatttgcatacatttttca |
56255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Complemental strand, 40917301 - 40916840
Alignment:
| Q |
8 |
aaatatgcataaataaatgcattgtgatctcattttcttaatttataatatagatataaaatggttgttacaaaagtgtgttctttgggtttgtttaacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40917301 |
aaatatgcataaataaatgcattgtgatctcattttcttaatttataatatagatataaaatggttgttacaaaagtgtgttctttgggtttgtttaacc |
40917202 |
T |
|
| Q |
108 |
atgttctcatatattaggaccgtttaatggacatgatataattagaatgtgataaactatcaaacttttaggaattctgctattcctctgcacatttcgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
40917201 |
atgttctcatatattaggaccgtttaatggacatgagataattagaatgtgataaactatcaaacttttaggaattctgctattcccctacacatttcgc |
40917102 |
T |
|
| Q |
208 |
ttccatccagtagctttgtcaaaaatgcccatgcattagttaattaacgtaaatgtaaatttatgcgttagttcacaaacattgtgtcacttaagatacg |
307 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40917101 |
ttccatccagtagctttgctgaaaatgcccatgcgttagttaactaacgtaaatgtaaatttatgcgttagttaacaaacattgtgtcacttaagataca |
40917002 |
T |
|
| Q |
308 |
catgtataaagtcctgcttgagttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacc |
407 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40917001 |
catgcataaagtcctgcttgagttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacc |
40916902 |
T |
|
| Q |
408 |
tccattttccctaatttttcaatccttctttcatacatttagtcatttgcatacatttttca |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40916901 |
tccattttccctaatttttcaatccttctttcatacatttagtcatttgcatacatttttca |
40916840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 438
Target Start/End: Complemental strand, 46273468 - 46273356
Alignment:
| Q |
326 |
tgagttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttt |
425 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||||||||||||||||| || |||||| | ||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
46273468 |
tgagttaactcacgcaaccattagcacatgcgtgagttaactcacgcacactctgtgcataaaaccagaagaggctgaaacctttattttccctaatttt |
46273369 |
T |
|
| Q |
426 |
tcaatccttcttt |
438 |
Q |
| |
|
||||||||||||| |
|
|
| T |
46273368 |
tcaatccttcttt |
46273356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 446
Target Start/End: Complemental strand, 38458317 - 38458191
Alignment:
| Q |
321 |
ctgcttgagttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttcccta |
420 |
Q |
| |
|
|||| |||||||||||| ||| |||| ||| |||||||||||||||||| ||||||||| | | ||| | ||||||| |||||||| |||||||||| |
|
|
| T |
38458317 |
ctgcgtgagttaactcacgcagacattagcacatgcgtgagttaactcacgcacagtctgtgcatacaaccaaaagaggcagaaacctctattttcccta |
38458218 |
T |
|
| Q |
421 |
attttt-caatccttctttcatacatt |
446 |
Q |
| |
|
||||| ||||| |||||||||||||| |
|
|
| T |
38458217 |
ttttttgcaatcattctttcatacatt |
38458191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 357 - 473
Target Start/End: Original strand, 31116307 - 31116431
Alignment:
| Q |
357 |
gtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttcaatccttctttcata--------cattta |
448 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||| | |
|
|
| T |
31116307 |
gtgagttaactcacgcccagtctgtgtaaaaaactagaagaggcagaaacctctattttccataatttttcaatccttctttcatacattcattcattca |
31116406 |
T |
|
| Q |
449 |
gtcatttgcatacatttttcatcat |
473 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31116407 |
gtcatttgcatacatttttcatcat |
31116431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 321 - 446
Target Start/End: Complemental strand, 11816064 - 11815939
Alignment:
| Q |
321 |
ctgcttgagttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttcccta |
420 |
Q |
| |
|
|||| |||||||||||| ||| ||||| ||| |||||||||||||||||| ||||||||| | | ||| ||||||||| ||||||| |||||||||| |
|
|
| T |
11816064 |
ctgcgtgagttaactcacgcagccattagcacatgcgtgagttaactcacgcacagtctgtgcatacaaccagaagaggcataaacctctattttcccta |
11815965 |
T |
|
| Q |
421 |
atttttcaatccttctttcatacatt |
446 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11815964 |
ttttttcaatccttctttcatacatt |
11815939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 373
Target Start/End: Complemental strand, 187320 - 187176
Alignment:
| Q |
229 |
aaaatgcccatgcattagttaattaacgtaaatgtaaatttatgcgttagttcacaaacattgtgtcacttaagatacgcatgtataaagtcctgcttga |
328 |
Q |
| |
|
||||||||||||| |||||||| ||||| || |||||| |||||||||||| |||||| | || ||||||| | |||||| |||| |||| ||| |
|
|
| T |
187320 |
aaaatgcccatgcgttagttaactaacgcaagtgtaaaactatgcgttagttaacaaacgctacgttacttaagtaatgcatgtgtaaaacactgcatga |
187221 |
T |
|
| Q |
329 |
gttaactcatgcaaccatttagacacgcgtgagttaactcacgct |
373 |
Q |
| |
|
||||||||||||| ||||| ||| || |||||||||||||||| |
|
|
| T |
187220 |
gttaactcatgcagccattagcacatgcatgagttaactcacgct |
187176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 446
Target Start/End: Complemental strand, 28036541 - 28036449
Alignment:
| Q |
355 |
gcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaattttt-caatccttctttcatacatt |
446 |
Q |
| |
|
|||||||||||||||||| |||| |||| | | ||| | ||||||| |||||||| |||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
28036541 |
gcgtgagttaactcacgcacagtttgtgcatacaaccaaaagaggcagaaacctctattttccctattttttgcaatcattctttcatacatt |
28036449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 31116179 - 31116299
Alignment:
| Q |
197 |
gcacatttcgcttccatccagtagctttgtcaaaaatgcccatgcattagttaattaacgtaaatgtaaatttatgcgttagttcacaaacattgtgtca |
296 |
Q |
| |
|
|||||||||||| ||| |||| ||||||| | |||| || ||| |||||||| ||||| || |||||||||||| ||||||| || ||| ||| |||| |
|
|
| T |
31116179 |
gcacatttcgctcccacccagcagctttgccgaaaaaacctctgcgttagttaactaacgcaagtgtaaatttatgtgttagttaactaacgttgcgtca |
31116278 |
T |
|
| Q |
297 |
cttaagatacgcatgtataaa |
317 |
Q |
| |
|
|||||| ||||| ||||||| |
|
|
| T |
31116279 |
cttaagtaacgcaagtataaa |
31116299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 355 - 473
Target Start/End: Original strand, 16357 - 16473
Alignment:
| Q |
355 |
gcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttcaatccttctttcatacatttagtcatt |
454 |
Q |
| |
|
|||||||||||||||||| || |||||| | |||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
16357 |
gcgtgagttaactcacgcacactctgtgcatgaaaccagaagaggcagaaacctctattttccctaatttttcaatccttctttcatacattcattca-- |
16454 |
T |
|
| Q |
455 |
tgcatacatttttcatcat |
473 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
16455 |
agcatacatttttcatcat |
16473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 229 - 446
Target Start/End: Original strand, 28539486 - 28539712
Alignment:
| Q |
229 |
aaaatgcccatgcattagttaattaacgtaaatgtaaatttatgcgttagttcacaaacattgtgtcacttaagatacgcatgtataaagtcctgcttga |
328 |
Q |
| |
|
||||| ||||||||||||| || ||||| || |||||||| ||||||||||| || ||| ||| | ||||||| |||||||| ||||| |||| || |
|
|
| T |
28539486 |
aaaatacccatgcattagtaaactaacgcaagtgtaaattaatgcgttagttaactaacgttgcgctacttaagtaacgcatgtgtaaagcactgcgcga |
28539585 |
T |
|
| Q |
329 |
gttaactcatgcaac---------catttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccct |
419 |
Q |
| |
|
||||||||| ||||| |||| || |||||||||||||||||| || |||||| | ||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
28539586 |
gttaactcacgcaactcacgcaaccattagcacttgcgtgagttaactcacgcacactctgtgcataaaaccagaagaggcataaacctctattttccct |
28539685 |
T |
|
| Q |
420 |
aatttttcaatccttctttcatacatt |
446 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
28539686 |
aatttttcaatccttctttcatacatt |
28539712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 444
Target Start/End: Original strand, 33296575 - 33296690
Alignment:
| Q |
328 |
agttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttc |
427 |
Q |
| |
|
|||||||||| ||| |||| | ||| |||||||||||||||||| || |||||| | | ||| ||||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
33296575 |
agttaactcacgcagacattaacacatgcgtgagttaactcacgcacaatctgtgcatacaaccagaagaggcagaaacctctattttccct-atttttc |
33296673 |
T |
|
| Q |
428 |
aatccttctttcataca |
444 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
33296674 |
aatccttctttcataca |
33296690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 446
Target Start/End: Original strand, 40552855 - 40552940
Alignment:
| Q |
362 |
ttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttc-cctaatttttcaatccttctttcatacatt |
446 |
Q |
| |
|
||||||||||| ||||||||| | |||| |||| |||| |||||||| ||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
40552855 |
ttaactcacgcacagtctgtgcatgaaaccagaacaggcagaaacctctattttttcctaatttttcaatccatctttcatacatt |
40552940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 49000685 - 49000612
Alignment:
| Q |
374 |
cagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaattttt-caatccttctttcatacatt |
446 |
Q |
| |
|
||||||||||| | ||| ||||||||| ||||| || |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
49000685 |
cagtctgtgtatacaaccagaagaggcagaaacttctattttccctattttttgcaatccttctttcatacatt |
49000612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 471
Target Start/End: Original strand, 43782039 - 43782183
Alignment:
| Q |
327 |
gagttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccct-aatttt |
425 |
Q |
| |
|
||||||||||| ||||||||| ||| || ||||||||||||||||||| |||| || || ||||| ||| | ||||| |||||||||| |||||| |
|
|
| T |
43782039 |
gagttaactcacgcaaccattagcacatgcatgagttaactcacgctcaggttgtgcaacaaggtagaaatggcag-aacctacattttccctaaatttt |
43782137 |
T |
|
| Q |
426 |
tcaatccttctttcatacatttagtcatttgcatacatttttcatc |
471 |
Q |
| |
|
||| || ||| | | | |||| ||||| |||||||||||||||||| |
|
|
| T |
43782138 |
tcattcattcatactttcattcagtcaattgcatacatttttcatc |
43782183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 46190322 - 46190379
Alignment:
| Q |
223 |
ttgtcaaaaatgcccatgcattagttaattaacgtaaatgtaaatttatgcgttagtt |
280 |
Q |
| |
|
||||||||||||||| |||| ||||||| |||| || ||||||| |||||||||||| |
|
|
| T |
46190322 |
ttgtcaaaaatgcccctgcactagttaaccaacgcaagtgtaaatctatgcgttagtt |
46190379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 328 - 446
Target Start/End: Original strand, 28637 - 28754
Alignment:
| Q |
328 |
agttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttc |
427 |
Q |
| |
|
|||||||| | ||| ||||| | ||| |||| ||||||||||||| ||||||||| |||||| ||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
28637 |
agttaactaacgcagccattaacacatgcgttagttaactcacgcccagtctgtgcaaaaaatcagaagaggcagaaacctctattttccctaa-ttttc |
28735 |
T |
|
| Q |
428 |
aatccttctttcatacatt |
446 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28736 |
aatccttctttcatacatt |
28754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 28590 - 28640
Alignment:
| Q |
230 |
aaatgcccatgcattagttaattaacgtaaatgtaaatttatgcgttagtt |
280 |
Q |
| |
|
|||||||||||| |||||||| ||||| || |||||| ||||||||||||| |
|
|
| T |
28590 |
aaatgcccatgcgttagttaactaacgcaagtgtaaaattatgcgttagtt |
28640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 326 - 446
Target Start/End: Complemental strand, 7527030 - 7526910
Alignment:
| Q |
326 |
tgagttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttt |
425 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||||||||||||||| | ||||||||| | | || ||||||||| |||||||| |||||||||| |||| |
|
|
| T |
7527030 |
tgagttaactcacgcaaccattagcacatgcgtgagttaactcacacacagtctgtgcatacaaacagaagaggcagaaacctctattttccctattttt |
7526931 |
T |
|
| Q |
426 |
tcaatccttctttcatacatt |
446 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
7526930 |
tcaatccttctttcaaacatt |
7526910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 355 - 446
Target Start/End: Complemental strand, 35018675 - 35018584
Alignment:
| Q |
355 |
gcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttcaatccttctttcatacatt |
446 |
Q |
| |
|
|||||||||||||||||| || |||||| | | ||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35018675 |
gcgtgagttaactcacgcacaatctgtgcatacaaccagaagaggcagaaacctctattttccctattttttcaatccttctttcatacatt |
35018584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 7919401 - 7919342
Alignment:
| Q |
221 |
ctttgtcaaaaatgcccatgcattagttaattaacgtaaatgtaaatttatgcgttagtt |
280 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||| || || ||||||||||||||||| |
|
|
| T |
7919401 |
ctttgtccaaaatgcccctgcattagttaactaacgcaagtgaaaatttatgcgttagtt |
7919342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 446
Target Start/End: Original strand, 4362082 - 4362170
Alignment:
| Q |
360 |
agttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttt--tcaatccttctttcatacatt |
446 |
Q |
| |
|
|||||||||| || ||||||||| | | ||| ||||||||| ||||| || ||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
4362082 |
agttaactcatgcacagtctgtgcatacaacaagaagaggcagaaacgtctatttttcctcttttttttcaatccttctttcatacatt |
4362170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 236 - 446
Target Start/End: Complemental strand, 39466354 - 39466143
Alignment:
| Q |
236 |
ccatgcattagttaattaacgtaaatgtaaatttatgcgttagttcacaaacattgtgtcacttaagatacgcatgtataaagtcctgcttgagttaact |
335 |
Q |
| |
|
|||||| |||||||| ||||| || ||||||| |||||||||||| || || ||||| ||||||| |||| || |||| |||| |||||||||| |
|
|
| T |
39466354 |
ccatgcgttagttaactaacgcaagtgtaaatgtatgcgttagttaactaatgttgtgcaacttaagtatcgcaagtgtaaatcactgcgtgagttaact |
39466255 |
T |
|
| Q |
336 |
catgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaattttt-caatcctt |
434 |
Q |
| |
|
||||||||| | ||| |||||||||||||| ||| | ||||||| | | ||| ||||||||| ||||| || |||||||||| ||||| |||||||| |
|
|
| T |
39466254 |
tgcgcaaccattaacacatgcgtgagttaactcgcgcaccgtctgtgcatacaaccagaagaggcagaaacatctattttccctattttttgcaatcctt |
39466155 |
T |
|
| Q |
435 |
ctttcatacatt |
446 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39466154 |
ctttcatacatt |
39466143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 435
Target Start/End: Original strand, 42704390 - 42704596
Alignment:
| Q |
229 |
aaaatgcccatgcattagttaattaacgtaaatgtaaatttatgcgttagttcacaaacattgtgtcacttaagatacgcatgtataaagtcctgcttga |
328 |
Q |
| |
|
||||| ||||||| |||| ||| ||||| || |||||||| ||| ||||||| || ||| ||| | ||||||| || ||||| ||||| || | ||| |
|
|
| T |
42704390 |
aaaatacccatgcgttagctaactaacgcaagtgtaaattaatgtgttagttaactaacgttgcgctacttaagtaacacatgtgtaaagcactacgtga |
42704489 |
T |
|
| Q |
329 |
gttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttca |
428 |
Q |
| |
|
||||||||| ||||||||| | | ||||||||||||||| || || |||||| | |||| ||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
42704490 |
gttaactcacgcaaccattagcatatgcgtgagttaactcaagcacactctgtgcatgaaaccagaagaggcagaaacctctattttccctaatgtttca |
42704589 |
T |
|
| Q |
429 |
atccttc |
435 |
Q |
| |
|
||||||| |
|
|
| T |
42704590 |
atccttc |
42704596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 243 - 473
Target Start/End: Original strand, 21283798 - 21284019
Alignment:
| Q |
243 |
ttagttaattaacgtaaatgtaaatttatgcgttagttcacaaacattgtgtcacttaagatacgcatgtataaagtcctgcttgagttaactcatgcaa |
342 |
Q |
| |
|
|||||||| ||||| || |||||| |||| ||||||| || ||| || || ||||||| |||||||| |||| |||| | |||||||||| ||| |
|
|
| T |
21283798 |
ttagttaactaacgcaagtgtaaaactatgtgttagttaactaacgctgcgttacttaagtaacgcatgtgtaaaacactgcgtaagttaactcacgcag |
21283897 |
T |
|
| Q |
343 |
ccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttcaatccttctttcata |
442 |
Q |
| |
|
||||| ||| |||||||||||||||||| ||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
21283898 |
ccattagcacatgcgtgagttaactcacgcacagtctgtg-------ccagaagaggcataaacctctattttccctaattttccaatccttctttcata |
21283990 |
T |
|
| Q |
443 |
catttagtcatttgcatacatttttcatcat |
473 |
Q |
| |
|
|||| | ||| |||||||||||||||||| |
|
|
| T |
21283991 |
cattcattca--agcatacatttttcatcat |
21284019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 326 - 446
Target Start/End: Original strand, 32304988 - 32305108
Alignment:
| Q |
326 |
tgagttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttt |
425 |
Q |
| |
|
|||||||||||| | | ||||| ||| |||||||||||||||||| ||||||| | | | ||| ||||||||| | |||||| ||||| |||| |||| |
|
|
| T |
32304988 |
tgagttaactcacgtagccattagcacatgcgtgagttaactcacgcacagtctgcgcatacaaccagaagaggcagcaacctctattttacctattttt |
32305087 |
T |
|
| Q |
426 |
tcaatccttctttcatacatt |
446 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32305088 |
tcaatccttctttcatacatt |
32305108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 446
Target Start/End: Original strand, 48576850 - 48576933
Alignment:
| Q |
364 |
aactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaattttt-caatccttctttcatacatt |
446 |
Q |
| |
|
|||||||| ||||||||| | | ||| ||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
48576850 |
aactcacggacagtctgtgcatacaaccagaagaggcagaaacctctattttccctattttttgcaatccttctttcatacatt |
48576933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 473
Target Start/End: Complemental strand, 6778724 - 6778484
Alignment:
| Q |
229 |
aaaatgcccatgcattagttaattaacgtaaatgtaaatttatgcgttagttcacaaacattgtgtcacttaagatacgcatgtataaagtcctgcttga |
328 |
Q |
| |
|
||||| ||||| | |||||||| |||| || |||||||| ||| ||||||| || ||| ||||| ||||||| |||||||| ||||| |||| ||| |
|
|
| T |
6778724 |
aaaatacccatacgttagttaactaacacaagtgtaaattaatgtgttagttaactaacgttgtgctacttaagtaacgcatgtgtaaagcactgcgtga |
6778625 |
T |
|
| Q |
329 |
gttaactcatgcaaccatttagacacgcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttca |
428 |
Q |
| |
|
||||||||| ||| ||||| ||| |||||||||||||||||| || || || | || |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
6778624 |
gttaactcacgcagccattagcacatgcgtgagttaactcacgcaca--ctctgcatgaattcagaagaggtagaaacctttattttccctaatttttca |
6778527 |
T |
|
| Q |
429 |
atccttctttcatacatttagtcatttgcatacatttttcatcat |
473 |
Q |
| |
|
||||||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
6778526 |
atccttctttcatacatacattca--agcatacatttttcatcat |
6778484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 371
Target Start/End: Complemental strand, 53630371 - 53630223
Alignment:
| Q |
223 |
ttgtcaaaaatgcccatgcattagttaattaacgtaaatgtaaatttatgcgttagttcacaaacattgtgtcacttaagatacgcatgtataaagtcct |
322 |
Q |
| |
|
||||| ||||| ||||||| |||||||| ||||| || |||||||| ||||||||||| || ||||||| | ||||||| ||||||||||||| || |
|
|
| T |
53630371 |
ttgtccaaaattcccatgcgttagttaactaacgcaagtgtaaattaatgcgttagttaactaacattgcgctacttaagtaacgcatgtataaatcact |
53630272 |
T |
|
| Q |
323 |
gcttgagttaactcatgcaaccatttagacacgcgtgagttaactcacg |
371 |
Q |
| |
|
| |||||||||| ||| ||||| ||| ||||||||||||||||| |
|
|
| T |
53630271 |
acgcaagttaactcacgcagccattagcacatgcgtgagttaactcacg |
53630223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 473
Target Start/End: Complemental strand, 15637838 - 15637802
Alignment:
| Q |
437 |
ttcatacatttagtcatttgcatacatttttcatcat |
473 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
15637838 |
ttcattcatttagtcaattgcatacatttttcatcat |
15637802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 357 - 446
Target Start/End: Original strand, 256592 - 256681
Alignment:
| Q |
357 |
gtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttcaatccttctttcatacatt |
446 |
Q |
| |
|
|||||||||||||||| || |||||| | |||| ||||||||| |||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
256592 |
gtgagttaactcacgcacaatctgtgcatgaaaccagaagaggcagaaacctctattttccctaattttttaatccttctttcatacatt |
256681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 446
Target Start/End: Complemental strand, 2743821 - 2743729
Alignment:
| Q |
355 |
gcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaattttt-caatccttctttcatacatt |
446 |
Q |
| |
|
|||||||||||||||||| ||||||||| | | ||| ||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
2743821 |
gcgtgagttaactcacgcacagtctgtgcatacaaccagaagaggcagaaacctctattttccctattttttgcaatccttctttcatacatt |
2743729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 446
Target Start/End: Complemental strand, 13274964 - 13274872
Alignment:
| Q |
355 |
gcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaattttt-caatccttctttcatacatt |
446 |
Q |
| |
|
|||||||||||||||||| ||||||||| | | ||| ||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
13274964 |
gcgtgagttaactcacgcacagtctgtgcatacaaccagaagaggcagaaacctctattttccctattttttgcaatccttctttcatacatt |
13274872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 358 - 446
Target Start/End: Complemental strand, 21102194 - 21102106
Alignment:
| Q |
358 |
tgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttcaatccttctttcatacatt |
446 |
Q |
| |
|
||||||||||||||| |||||||| | || || | ||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21102194 |
tgagttaactcacgcacagtctgtacataagaccaaaagaggcagaaacctctattttccctattttttcaatccttctttcatacatt |
21102106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 446
Target Start/End: Complemental strand, 7820 - 7731
Alignment:
| Q |
357 |
gtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttcaatccttctttcatacatt |
446 |
Q |
| |
|
|||||||||||||| || ||||| || | || | |||| ||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7820 |
gtgagttaactcacacttagtctctgcagcaagccagaactggcagaaacctctattttccctaatttttcaatccttctttcatacatt |
7731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 446
Target Start/End: Complemental strand, 14097477 - 14097388
Alignment:
| Q |
357 |
gtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaatttttcaatccttctttcatacatt |
446 |
Q |
| |
|
|||||||||||||| || ||||| || | || | |||| ||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14097477 |
gtgagttaactcacacttagtctctgcagcaagccagaactggcagaaacctctattttccctaatttttcaatccttctttcatacatt |
14097388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 446
Target Start/End: Original strand, 5943808 - 5943900
Alignment:
| Q |
355 |
gcgtgagttaactcacgctcagtctgtgtaaaaaactagaagaggctgaaacctccattttccctaattttt-caatccttctttcatacatt |
446 |
Q |
| |
|
||||| |||||||||||| ||||||||| | | ||| ||||||||| ||| ||| |||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
5943808 |
gcgtgggttaactcacgcacagtctgtgcatacaaccagaagaggcagaagcctttattttccctattttttgcaattcttctttcatacatt |
5943900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 446
Target Start/End: Original strand, 37227109 - 37227181
Alignment:
| Q |
375 |
agtctgtgtaaaaaactagaagaggctgaaacctccattttccctaattttt-caatccttctttcatacatt |
446 |
Q |
| |
|
|||||||| | | ||| ||||||||| |||||||| |||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
37227109 |
agtctgtgcatacaaccagaagaggcagaaacctctattttctctattttttgcaatccttctttcatacatt |
37227181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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