View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5310_high_1 (Length: 559)
Name: NF5310_high_1
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5310_high_1 |
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| [»] scaffold0580 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 379
Target Start/End: Complemental strand, 15415601 - 15415258
Alignment:
| Q |
10 |
aagaatattgggaatgtcaaatgcactataaaagagaagttagttaatgatttgatctaagaaatcaatttgttagataaagaaaactaaacagaggaaa |
109 |
Q |
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| T |
15415601 |
aagaaaattgggaatgtcaaatgcactataaaagagaagttagttaatgatttgatctaagaaatcaatttgttagataaagaaaactaaacagaggaaa |
15415502 |
T |
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| Q |
110 |
tgaatcaggttttaagtaattgtgataggttttaaataattgtgatgatgttgcttgtttcggattgagccaaggcctaatccggactaagatccaggta |
209 |
Q |
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| T |
15415501 |
tgaatcaggttttaagtaact--------------------gtgatgatgttgcttgtttcggattgagccaaggcctaatctggactaagatccaggtc |
15415422 |
T |
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| Q |
210 |
acccgagaactagacgcttgatagacagtatcgtggacacaccttaaatcctactggattgtggtctggacgctctatctgaactgttcagtctggatcc |
309 |
Q |
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| T |
15415421 |
acctgagaattagacgcttgacagacagtatcatggacacaccttaaattctactggattgtgatctggacgctatatc------gtgcagtctggatcc |
15415328 |
T |
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| Q |
310 |
aatattgtgattatcaccagatcattacaagtgtcccttgaggacacatgtgcgaaggcctaacaaccaa |
379 |
Q |
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| T |
15415327 |
aatattgtgattatcactagatcattacaagtgtcccttgaggacacctgtgcgaaggcctaacaaccaa |
15415258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 377 - 541
Target Start/End: Complemental strand, 15415220 - 15415056
Alignment:
| Q |
377 |
caatgttggtcagatatctctctctttaccatatgtttacctcactctctt-atcactcactggcttgagcattggaacacgtgtacaccaccccctccg |
475 |
Q |
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| T |
15415220 |
caatgttggt-aggtatctctctctttaccatatgtttatctcactctcttgatcactcactggcttgagcattggaacacgtgtacaccaccccctccg |
15415122 |
T |
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| Q |
476 |
atggagaactcacaacagagtgcaatagactcacaactgattcctccctctttgcagtaacaatca |
541 |
Q |
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| T |
15415121 |
atggagaactcacgacagagtacgatagactcacaacggattcctccctcttcgcagtaacaatca |
15415056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 272 - 355
Target Start/End: Original strand, 40410152 - 40410235
Alignment:
| Q |
272 |
ggtctggacgctctatctgaactgttcagtctggatccaatattgtgattatcaccagatcattacaagtgtcccttgaggaca |
355 |
Q |
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| T |
40410152 |
ggtcaggacgctatatctggaccgttcaatctagatccaatgatgtgactatcaccagattattacaagtgtcccttgaggaca |
40410235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0580
Description:
Target: scaffold0580; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 1214 - 1274
Alignment:
| Q |
295 |
gttcagtctggatccaatattgtgattatcaccagatcattacaagtgtcccttgaggaca |
355 |
Q |
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| T |
1214 |
gttcaatctagatccaatgatgtgactatcaccagattattacaagtgtcccataaggaca |
1274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 8953 - 9013
Alignment:
| Q |
295 |
gttcagtctggatccaatattgtgattatcaccagatcattacaagtgtcccttgaggaca |
355 |
Q |
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| T |
8953 |
gttcaatctagatccaatgatgtgactatcaccagattattacaagtgtcccataaggaca |
9013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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