View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5310_high_11 (Length: 255)
Name: NF5310_high_11
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5310_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31388691 - 31388453
Alignment:
| Q |
1 |
ccactttccaaaaagatagttgaaagaatagctgaatgcataagaagtgtgtagaatgataatagnnnnnnnnn-tcctaatattctccaataatttgtg |
99 |
Q |
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| T |
31388691 |
ccactttccaaaaagatagttgaaagaagagctgaatgcataagaagtgtgtagaatgataatagaaaaaaaaaatcctaatattctccaataatttgtg |
31388592 |
T |
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| Q |
100 |
gtcatcaaaagtcataatctgttgttgacaagatatgttgtctttctattgcaaacaaaacttggacagttgtcatttaaggattgaataaaggttttta |
199 |
Q |
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| T |
31388591 |
gtcatcaaaagtcacaatctgttgttgacaagatatgttgtctttctattgcaaacaaaacttggacagttgtcatttaaggattgaataaaggttttta |
31388492 |
T |
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| Q |
200 |
tatgaaagtttgtaaggtttataataatcagaaggatag |
238 |
Q |
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| T |
31388491 |
tatgaaagtttgtaaggtttataataatcagaaggatag |
31388453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 31461202 - 31461055
Alignment:
| Q |
91 |
taatttgtggtcatcaaaagtcataatctgttgttgacaagatatgttgtctttctattgcaaacaaaacttggacagttgtcatttaaggattgaataa |
190 |
Q |
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| T |
31461202 |
taatttgtggtcatcacaagtcacaatctgttgttgacagtatatgttgtctttctattgcaaacaaaacttggacagttgtgattgcaggatttaataa |
31461103 |
T |
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| Q |
191 |
aggtttttatatgaaagtttgtaaggtttataataatcagaaggatag |
238 |
Q |
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| T |
31461102 |
aggtttttatatgaaagtttgtaaggattataataatcagaaggatag |
31461055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 91 - 232
Target Start/End: Complemental strand, 40844112 - 40843969
Alignment:
| Q |
91 |
taatttgtggtcatcaaaagtcat--aatctgttgttgacaagatatgttgtctttctattgcaaacaaaacttggacagttgtcatttaaggattgaat |
188 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||| |
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| T |
40844112 |
taatttgtggtcatcacaagtctctcaatctgttgttgacaagatatgttgtctttctattgcaaataagacttggacagttgtcattgaaggattgaat |
40844013 |
T |
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| Q |
189 |
aaaggtttttatatgaaagtttgtaaggtttataataatcagaa |
232 |
Q |
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| T |
40844012 |
aaaggtttttatatgaaagtttgcaaggtttataataatcagaa |
40843969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31461362 - 31461298
Alignment:
| Q |
1 |
ccactttccaaaaagatagttgaaagaatagctgaatgcataagaagtgtgtagaatgataatag |
65 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||| |
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| T |
31461362 |
ccactttccaaaaagatagttgaaagaagaactgaatgcataagaagtgaatagaatgataatag |
31461298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40844372 - 40844324
Alignment:
| Q |
1 |
ccactttccaaaaagatagttgaaagaatagctgaatgcataagaagtg |
49 |
Q |
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|||||||||| |||||| |||||||||| |||||||||||||||||||| |
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| T |
40844372 |
ccactttccataaagatggttgaaagaagagctgaatgcataagaagtg |
40844324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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