View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5310_high_23 (Length: 205)
Name: NF5310_high_23
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5310_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 52095185 - 52095017
Alignment:
| Q |
18 |
gttttgacattatagcagcggtaaggtttggtttatccgattttaaacattctgcactggtttttagtggagtatgctacccagagttttgggttatagt |
117 |
Q |
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| T |
52095185 |
gttttgacattataacagcggtaaggtttggtttatccgattttaaacattctgcactggtttttagtggagtatgctacccagagttttgggttatagt |
52095086 |
T |
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| Q |
118 |
ttctataagatacgattttgaatatcatgctggagaagtctcatctgatcctacatcggtagctccttc |
186 |
Q |
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| T |
52095085 |
ttctataagatacgattttgaatatcatgctggagaagtctcatctgatcctacatcggtagctccttc |
52095017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 36410711 - 36410603
Alignment:
| Q |
20 |
tttgacattatagcagcggtaaggtttggtttatccgattttaaacattctgcactggtttttagtggagtatgctacccagagttttgggttatagttt |
119 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36410711 |
tttgacattatagcagcgggaaggtttggtttattcgattttaaacattctgcactggtctttagtggagtatgctacccagagttttgggttatagttt |
36410612 |
T |
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| Q |
120 |
ctataagat |
128 |
Q |
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|||||||| |
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| T |
36410611 |
atataagat |
36410603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 36410584 - 36410538
Alignment:
| Q |
140 |
tatcatgctggagaagtctcatctgatcctacatcggtagctccttc |
186 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
36410584 |
tatcatgctggagaagtctcgtctgatcctacatatgtagctccttc |
36410538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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