View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5310_high_7 (Length: 325)

Name: NF5310_high_7
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5310_high_7
NF5310_high_7
[»] chr6 (1 HSPs)
chr6 (16-308)||(4058386-4058678)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 4058678 - 4058386
Alignment:
Q  16 atttaacaacccagctaaaactttaattcaacttcaaaataaaatcaatcagtttgcatagttaatttcaaattaatctctactacaatctctacggcca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4058678 atttaacaacccagctaaaactttaattcaacttcaaaataaaatcaatcagtttgcatagttaatttcaaattaatctctactacaatctctacggcca 4058579  T
Q  116 tggacttggagaccatgtttggattacaaacttcatatccaatcaaacaatgagaatttctcgtggaattagcaagaaaacttcgaaatggcttatatat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4058578 tggacttggagaccatgtttggattacaaacttcatatccaatcaaacaatgagaatttctcgtggaattagcaagaaaacttcgaaatggcttatatat 4058479  T
Q  216 gtcacccttccaatcccctattcatccgattttgcatcaaacaaatttcatatataactttatataggtaccgattagattattcaatttgaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4058478 gtcacccttccaatcccctattcatccgattttgcatcaaacaaatttcatatataactttatataggtactgattagattattcaatttgaa 4058386  T

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