View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5310_low_10 (Length: 264)
Name: NF5310_low_10
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5310_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 31388725 - 31388997
Alignment:
| Q |
1 |
tttcagtatcagtcgcatgatgttacttttgaataaaagggaaa--------------ctttcaaggaaactttcattaattatttacccgttgagtctg |
86 |
Q |
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| T |
31388725 |
tttcagtatcagtcgcatgatgttacttttgaataaaagggaaagtttcaaggagtttctttcaaggaaactttcattaattatttacccgttgcgtctg |
31388824 |
T |
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| Q |
87 |
atttcttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaaattctaa |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31388825 |
atttcttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaaattctaa |
31388924 |
T |
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| Q |
187 |
ctgttgaattgatgaagatcaatttgatgctatctattattgctacaatcttttgttattctcctatgcttct |
259 |
Q |
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| T |
31388925 |
ctgttgaattgatgaagatcaatttgatgctatctattattgctacaatcttttgttattctcttatgattct |
31388997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 31461396 - 31461664
Alignment:
| Q |
1 |
tttcagtatcagtcgcatgatgttacttttgaataaaagggaaactttcaaggaaa--ctttca--------ttaattatttacccgttgagtctgattt |
90 |
Q |
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| T |
31461396 |
tttcagtatcagtcgcatgatgttacttttgaataaaagggaaactttcaaggagattctttcaaggaaactttcattatttaccggttgagtctgattt |
31461495 |
T |
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| Q |
91 |
cttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaaattctaactgt |
190 |
Q |
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| T |
31461496 |
cttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaaattctaactgt |
31461595 |
T |
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| Q |
191 |
tgaattgatgaagatcaatttgatgctatctattattgctacaatcttttgttattctcctatgcttct |
259 |
Q |
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| T |
31461596 |
tgaattgatgaagatcaatttgatgctatctattattgctacaaccttttgttattctcctatgattct |
31461664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 80 - 259
Target Start/End: Original strand, 40844545 - 40844721
Alignment:
| Q |
80 |
gagtctgatttcttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaa |
179 |
Q |
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|||| ||||||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||| | |
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| T |
40844545 |
gagtatgatttcttgtgctgcctttgctttaatgtctttttgcttatcaagacaaattgatcttggttttgaaactgatctca---atttcttccttgga |
40844641 |
T |
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| Q |
180 |
attctaactgttgaattgatgaagatcaatttgatgctatctattattgctacaatcttttgttattctcctatgcttct |
259 |
Q |
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| T |
40844642 |
attctaactgttcaattgatgaagatcaatttgatgctatctattgtttctgcaatattttgctattctcttatgattct |
40844721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 31496103 - 31496267
Alignment:
| Q |
85 |
tgatttcttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaaattct |
184 |
Q |
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|||||||||||| || ||||||||||||||||||| ||||||||| | || |||||||||||||||| ||||||||| ||||||||||| |||| | |
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| T |
31496103 |
tgatttcttgtgttgcctttgctttaatgtctttttgcttatcaagacagatcgatcttggttttgaatctgatctcctcaatttcttccttggaatttt |
31496202 |
T |
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| Q |
185 |
aactgttgaattgatgaagatcaatttgatgctatctattattgctacaatcttttgttattctc |
249 |
Q |
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||| ||| |||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| |
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| T |
31496203 |
aaccgttcaattgatgaagatcaatttgattctatctattgttgctgcaatcttatgttattctc |
31496267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31495945 - 31495994
Alignment:
| Q |
1 |
tttcagtatcagtcgcatgatgttacttttgaataaaagggaaactttcaa |
51 |
Q |
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||||||||||||| ||||||||||| ||||||| |||| |||||||||||| |
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| T |
31495945 |
tttcagtatcagtagcatgatgttatttttgaa-aaaatggaaactttcaa |
31495994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 140199 - 140127
Alignment:
| Q |
78 |
ttgagtctgatttcttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaat |
153 |
Q |
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||||||||||||||| |||| |||||||||||||| ||||| ||||||||| |||||| | ||| |||||||| |
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| T |
140199 |
ttgagtctgatttct---gcaggttttgctttaatgtatttttacttatcaagacaaattgttattgattttgaat |
140127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 148220 - 148148
Alignment:
| Q |
78 |
ttgagtctgatttcttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaat |
153 |
Q |
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||||||||||||||| |||| |||||||||||||| ||||| ||||||||| |||||| | ||| |||||||| |
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| T |
148220 |
ttgagtctgatttct---gcaggttttgctttaatgtatttttacttatcaagacaaattgttattgattttgaat |
148148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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