View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5310_low_15 (Length: 245)
Name: NF5310_low_15
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5310_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 481330 - 481553
Alignment:
| Q |
1 |
ggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgcattcatgcatatttcaac |
100 |
Q |
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| T |
481330 |
ggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgcattcatgcatatttcaac |
481429 |
T |
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| Q |
101 |
acttttgagagagtcgagcctagggattatttgcagggttacatggaggttaggtcgatagtggccggtgatcaagtggagtaggaaagttcaatttgaa |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
481430 |
acttg-gagagagtcgagcctagggattatttgcagggttacatggaggttaggccgatagtggccggtgatcaagtggagtaggaaagttcaatttgaa |
481528 |
T |
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| Q |
201 |
aaggttagatattcacgaactaact |
225 |
Q |
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| T |
481529 |
aaggttagatattcacgaactaact |
481553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 9250224 - 9250148
Alignment:
| Q |
28 |
taaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgcattcatgcatatttcaacactt |
104 |
Q |
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| T |
9250224 |
taaatgtcaaacatgtaatattatgtgttgtttattgattagtatatgttaatgcatgcatgaacatttcagcactt |
9250148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 35209056 - 35208982
Alignment:
| Q |
16 |
ttgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgcattcatgc |
90 |
Q |
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| T |
35209056 |
ttgttatttacgtaaatgttaaatatgttatattacgtgttctttactgattagtatatgttgatgcatgcatgc |
35208982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31250538 - 31250639
Alignment:
| Q |
1 |
ggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgcattcatgcatatttcaac |
100 |
Q |
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||||| ||||||| |||||||||||||||| | |||||||||||| ||||||| ||||||| | | ||||||||| |||||||| |||| | |||||| | |
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| T |
31250538 |
ggtatgacaaagaaattgttatttatgtaattattaaacatgttacattatgtattgtttagt-agtaatatatgatgatgcatgcatgaaaatttcagc |
31250636 |
T |
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| Q |
101 |
act |
103 |
Q |
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||| |
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| T |
31250637 |
act |
31250639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 27661570 - 27661649
Alignment:
| Q |
1 |
ggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgat |
80 |
Q |
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| T |
27661570 |
ggtataacaaacaaattgttatttacataacttgtaaacatgttatattatttgttgtttattgattagtatatgttgat |
27661649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 22507987 - 22507888
Alignment:
| Q |
27 |
gtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatgcattcatgcatatttcaacacttttgagagagtcgagcctaggga |
126 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||| | | | ||||||| ||||| |||||| || ||| ||||||||| |
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| T |
22507987 |
gtaaatgttaaacatgttatattatgtgttgtttacatattaatatatgtagatgtaggcgttcatattttaacac-tttgagggattcgcgcctaggga |
22507889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12081401 - 12081481
Alignment:
| Q |
1 |
ggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgtgttgtttactgattaatatatgttgatg |
81 |
Q |
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||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||| ||| || |||| |||||| ||||| |
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| T |
12081401 |
ggtataacaaagacatttttatttacataaatgttaaacaagttatattatgtgttattttcttattagtatatgatgatg |
12081481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3190865 - 3190782
Alignment:
| Q |
1 |
ggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgt---gttgtttactgattaatatatgttgatg |
81 |
Q |
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||||||||||||| ||||||||||| ||||| |||||||||||||||| | | |||||||||||||| |||||||||||| |
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| T |
3190865 |
ggtataacaaagaaattgttatttacttaaattttaaacatgttatattttttttgtttgtttactgattagtatatgttgatg |
3190782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3199683 - 3199600
Alignment:
| Q |
1 |
ggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgt---gttgtttactgattaatatatgttgatg |
81 |
Q |
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||||||||||||| ||||||||||| ||||| |||||||||||||||| | | |||||||||||||| |||||||||||| |
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| T |
3199683 |
ggtataacaaagaaattgttatttacttaaattttaaacatgttatattttttttgtttgtttactgattagtatatgttgatg |
3199600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3208521 - 3208438
Alignment:
| Q |
1 |
ggtataacaaagagattgttatttatgtaaatgttaaacatgttatattatgt---gttgtttactgattaatatatgttgatg |
81 |
Q |
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||||||||||||| ||||||||||| ||||| |||||||||||||||| | | |||||||||||||| |||||||||||| |
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| T |
3208521 |
ggtataacaaagaaattgttatttacttaaattttaaacatgttatattttttttgtttgtttactgattagtatatgttgatg |
3208438 |
T |
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