View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5310_low_18 (Length: 240)
Name: NF5310_low_18
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5310_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38625376 - 38625152
Alignment:
| Q |
1 |
ccaaagcagaactggactgaaatgtggaggcaacttaaaaacatctcccatcattatgaattccattatccaccagaaagggaagatgctgtaaatatgc |
100 |
Q |
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| T |
38625376 |
ccaaagcagaactggactgaaatgtggaggcaacttaaaaacatctcccatcattatgaattccattatccaccagaaagggaagatgctgtaaatatgc |
38625277 |
T |
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| Q |
101 |
tgtggagacagatcaagcacaagcttccaggaataagacaatcagttcataggagccaaaggcttaaaataccagattggtggaagagatgattttcaga |
200 |
Q |
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| T |
38625276 |
tgtggagacagatcaagcacaagcttccaggaataagacaatcagttcataggagccaaaggcttaaaataccagattggtggaagagatgattttcaga |
38625177 |
T |
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| Q |
201 |
tttctgatccatccgttctccaatt |
225 |
Q |
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| T |
38625176 |
tttctgatccatccgttctccaatt |
38625152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 34623866 - 34623996
Alignment:
| Q |
1 |
ccaaagcagaactggactgaaatgtggaggcaacttaaaaacatctcccatcattatgaattccattatccaccagaaagggaagatgctgtaaatatgc |
100 |
Q |
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| T |
34623866 |
ccaaaacagaagtggactgaaatgtggaggcaggttaaaaacatctcccatcattatgaattccagtaccctccaaaaagagaggatgctgttaatatgc |
34623965 |
T |
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| Q |
101 |
tgtggagacagatcaagcacaagcttccagg |
131 |
Q |
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| T |
34623966 |
tttggagacaggtcaaacacaagcttccagg |
34623996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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