View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5310_low_4 (Length: 352)
Name: NF5310_low_4
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5310_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 43665572 - 43665908
Alignment:
| Q |
1 |
gggtggttgtttaccgtacaggaaataagcgctggcgctggatcatccacatgcattcaccttcataactctccgtcttcattctcttcacggtaatttc |
100 |
Q |
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| T |
43665572 |
gggtggttgtttaccgtacaggaaataagcgctggcgctggatcatccacatgcattcaccttcataactctccgtcttcattctcttcacggtaatttc |
43665671 |
T |
|
| Q |
101 |
tcaaatcattttcacactaatcattcaannnnnnnctttacgcataatcatttccttttggtgacaaatccattcattttcaactttctcaaatcggaaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43665672 |
tcaaatcattttcacactaatcattcaatttttttctttacgcataatcatttccttttggttacaaatccattcattttcaactttctcaaatcggaaa |
43665771 |
T |
|
| Q |
201 |
cacacgtgcttctgaatctataacatggcgatgaaccctaattttacttaaattcccaatttttcataaatttggataccccaattgcgtgttagtatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43665772 |
cacacgtgcttctgaatctataacatggcgatgaaccctaattttacttaaattcccaatttttcataaatttggataccccaattgcgtgttagtatca |
43665871 |
T |
|
| Q |
301 |
atatttcgacnnnnnnntggatcacgaaacccctttg |
337 |
Q |
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|||||||||| |||||||||||||||||||| |
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| T |
43665872 |
atatttcgacaaaaaaatggatcacgaaacccctttg |
43665908 |
T |
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