View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5310_low_8 (Length: 313)
Name: NF5310_low_8
Description: NF5310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5310_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 7081859 - 7081553
Alignment:
| Q |
1 |
actcttactttgatgcctatgttttatcagaatcaagtctctttgtatatccaacaaagatcataatcaaaacttgtggaactacacaacttctcaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7081859 |
actcttactttgatgcctatgttttatcagaatcaagtctctttgtatatccaacaaagatcataatcaaaacttgtggaactacacaacttctcaaatc |
7081760 |
T |
|
| Q |
101 |
catcattcccttaatctactttgcaaacactcaccttaactttacactctcctcagtttcttacacaagaggtagcttcatcttcccaaattcacaacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7081759 |
catcattcccttaatctactttgcaaacactcaccttaactttacactctcctcagtttcttacacaagaggtagcttcatcttcccaaattcacaacct |
7081660 |
T |
|
| Q |
201 |
ttccctcacacttccttcaatgaagaagtttcttacttagaaaacactatcccttcaaatctttgcttcagaaaagcttccatcatgccttcaaaatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7081659 |
ttccctcacacttccttcaatgaagaagtttcttacttagaaaacactatcccttcaaatctttgcttcagaaaagcttccatcatgccttcaaaatctt |
7081560 |
T |
|
| Q |
301 |
catctca |
307 |
Q |
| |
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||||||| |
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| T |
7081559 |
catctca |
7081553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 49019943 - 49020237
Alignment:
| Q |
1 |
actcttactttgatgcctatgttttatcagaatcaagtctctttgtatatccaacaaagatcataatcaaaacttgtggaactacacaacttctcaaatc |
100 |
Q |
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|||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||| |
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| T |
49019943 |
actcttactttgatgcatacgttttatcagaatcaagcctctttgtttatccaactaagatcataatcaaaacatgtggaacaacccaacttctcaaatc |
49020042 |
T |
|
| Q |
101 |
catcattcccttaatctactttgcaaa-cactca-ccttaactttacactctcctcagtttcttacacaagaggtagcttcatcttcccaaattcacaac |
198 |
Q |
| |
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||| |||| ||||| ||| |||||| || || | | |||||| |||| || ||||||||||| |||||||||||||||||| |||||| |
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| T |
49020043 |
cattcttccattaattcactatgcaaaccaaacaggcctcactttatgctcttgtc-----gctacacaagaggaagcttcatcttcccaaatgcacaac |
49020137 |
T |
|
| Q |
199 |
ctttccctcacacttccttcaatgaagaagtttcttacttagaaaacactatcccttcaaatctttgcttcagaaaagcttccatcatgccttcaaaatc |
298 |
Q |
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|||||||| |||| ||||||||| ||||| | || |||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
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| T |
49020138 |
ctttcccttacacaagcttcaatgacgaagtaacctatttagaagacactatcccttcaaatctttgccatagaaaagcttccatcatgccctctaaatc |
49020237 |
T |
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