View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311-Insertion-1 (Length: 1036)
Name: NF5311-Insertion-1
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 245 - 625
Target Start/End: Complemental strand, 696619 - 696239
Alignment:
| Q |
245 |
aaatcaatgggctttttaccctcaacaataagcacaaatctattacttaactagcttgaccatattcgagctacctacaaactcaaatatgaattattca |
344 |
Q |
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| T |
696619 |
aaatcaatgggctttttaccctcaacaataagcacaaatctattacttaactagcttgaccatgttcgagctacctacaaactcaaagatggattgttca |
696520 |
T |
|
| Q |
345 |
atatcctttaaattgctcacattttaaaaagaatgtttattgaaagttacgaaacgattgattgaataatttaaagttaattgaacaatcatcaaactca |
444 |
Q |
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| T |
696519 |
atatccttcaaattgctcacattttaaaaagaatgtttattgaaagatacgaaacgattgattgaataatttaaaattaattgaacaatcatcaaactca |
696420 |
T |
|
| Q |
445 |
aataccatgattgattagcgataatatttaggtgatttcaatatgttgagtgatgtttaaaagataactccaaggataagggtataaagtatacacctca |
544 |
Q |
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| T |
696419 |
aataccatgattgattagcgataatatttaggtgatttcaatatgttaagtgatgtttaaaagataactccaaggataagggtataaagtatacacctca |
696320 |
T |
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| Q |
545 |
agatttttaagaacgttatgaactccttaaaaactaagtaaaaacatcaaactaaaatcattattcattcaagacagcagc |
625 |
Q |
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| T |
696319 |
agatttttaagaacgttatgaactccttaaaaactaagtaaaaacatcaaactaaaatcattattcattcaagacagcagc |
696239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 672 - 1002
Target Start/End: Complemental strand, 696197 - 695868
Alignment:
| Q |
672 |
gtaaccaccatcaagtatgaagtttcccattctcaatcaaattgatcatggttgtttcctttaccctaaagtttcatcgttatannnnnnnncatttcac |
771 |
Q |
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| T |
696197 |
gtaaccaccatcaagtatgaagtttcccactctcaatcaaattgatcatggttgtttccttttccctaaaatttcatcattatattttttt-catttcac |
696099 |
T |
|
| Q |
772 |
atcaaaagacattgatgttgatatgtaatagtataaagcaaacaagattttattgaaaagaatcaaataattcattcactttcaccttcactcttgcata |
871 |
Q |
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| T |
696098 |
atcaaaagacattgatgttgatatgtaatagtataaagcaaacaagattttattgaaaagaatcaaataattcattcactttcaccttcactcttgcata |
695999 |
T |
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| Q |
872 |
c-aacaaatagttagtcatcgatttgatgtactaagtcatacttagctgcgataaaatatttgattacggcacannnnnnnacaaagttgaagtagtaag |
970 |
Q |
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| T |
695998 |
caaacaaatagttagtcatcgatttgatgcactaagtcatacttagctgcgat-aaatatttgattacagcaca-ttttttacaaagttgaagtagtaag |
695901 |
T |
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| Q |
971 |
gagatttg-aatcagagctaggcatgtgtttct |
1002 |
Q |
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| T |
695900 |
aagatttgaaatcagagctaggcatgtgtttct |
695868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 697281 - 697125
Alignment:
| Q |
7 |
aaggaaaaggcaagttgccaaaaaacaattcacctagttttggagggttttaaccaggttatgatatgaaatcatcttcctcttcccaccaattttgaat |
106 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
697281 |
aaggaaaaggaaagttgccaaaaaacaattcacctagttttggagggttttaaccgcgttatgatatgaaatcatcttcctcttcccaccaattttgaat |
697182 |
T |
|
| Q |
107 |
atttgatttctaacccacgaagacagtttcatgatcaaaagacttcttacttttatt |
163 |
Q |
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| T |
697181 |
atttgatttctatcccacgaagacagtttcatgatcaaaagacttcttacttttatt |
697125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 699336 - 699221
Alignment:
| Q |
43 |
gttttggagggttttaaccaggttatgatatgaaatcatcttcctcttcccaccaattttgaatatttgatttctaacccacgaagacagtttc-atgat |
141 |
Q |
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||||||||||||||| |||||||| |||| ||||| ||||||||||||||||||| |||| || ||||| ||||| | ||||||||| || || | ||| |
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| T |
699336 |
gttttggagggttttcaccaggttctgatttgaaaacatcttcctcttcccaccattttttaacctttga-ttctatctcacgaagacggtctcgacgat |
699238 |
T |
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| Q |
142 |
caaaagacttcttactt |
158 |
Q |
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| T |
699237 |
cgaaacacttcttactt |
699221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 246
Target Start/End: Complemental strand, 696741 - 696711
Alignment:
| Q |
216 |
gcaagagtaattaatattgagaaaagaataa |
246 |
Q |
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| T |
696741 |
gcaagagtaattaatattgagaaaagaataa |
696711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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