View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311-Insertion-3 (Length: 520)
Name: NF5311-Insertion-3
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311-Insertion-3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 309 - 520
Target Start/End: Complemental strand, 54543171 - 54542960
Alignment:
| Q |
309 |
tctggaaatgttctcacataacattgaaacattgctatcgtatcactgcttgactggtatacatctcatattttctttgctcgaaatacatctctgtaat |
408 |
Q |
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| T |
54543171 |
tctggaaatgttcacacataacattgaaacattgctatcgtatcactgcttgactggtatacatctcatattttctttgctccaaatacatctatgtaat |
54543072 |
T |
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| Q |
409 |
agcaagaccttagtaacttttctgcttttgttgttttaataggtcctttgatgaataattcggatgaagtacaggtcatacataacaaaggaggtgttaa |
508 |
Q |
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| T |
54543071 |
agcaagaccttagtaacttttctgcttttgttgttttaataggtcctttgataaataattcggatgaagtacatgtcatacataacaaaggaggtgttaa |
54542972 |
T |
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| Q |
509 |
gaggtcttctac |
520 |
Q |
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| T |
54542971 |
gaggtcttctac |
54542960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 118 - 309
Target Start/End: Complemental strand, 54543433 - 54543243
Alignment:
| Q |
118 |
ggcaggggtatgcttttgtttggtgtaaaggaaccaggacccagctgctgtaattgttattctcttatagttaggttggccttttcttattgtatacctc |
217 |
Q |
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| T |
54543433 |
ggcaggggtatgcttttgtttggtgtaaagggaccaggacc-agctgctgtaattgttattctcttatagctaggttggccttttcttattgtatacctc |
54543335 |
T |
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| Q |
218 |
agcctcatcttttgtgtgaggtggttgctgtctgtttttgggcggctccttgaggttaacagtttccaacgcatatctctccaccctcatat |
309 |
Q |
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| T |
54543334 |
agcctcatcttttgtgtgaggtggttgctgtctgtttttgggcggctccttgaggttaacagtttccaatgcatatctctccaccctcatat |
54543243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 54543506 - 54543431
Alignment:
| Q |
8 |
ggtttttgccttctgtcaataggatctgaaagttgcagttgtgnnnnnnnggttgttattgtcgtgcgcatggggc |
83 |
Q |
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| T |
54543506 |
ggtttttgccttctgtcaataggatctgaaagttgcagctgtgtttttttggttgttattgtcgtgcgcatggggc |
54543431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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