View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5311-Insertion-4 (Length: 83)
Name: NF5311-Insertion-4
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311-Insertion-4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 68; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-31
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 52095181 - 52095252
Alignment:
| Q |
8 |
aaaatagactgactgcttaaccaaccaatacaacataacagacaagattaagaagaatttcagcatatcaaa |
79 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52095181 |
aaaacagactgactgcttaaccaaccaatacaacataacagacaagattaagaagaatttcagcatatcaaa |
52095252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 36410732 - 36410778
Alignment:
| Q |
26 |
aaccaaccaatacaacataacagacaagattaagaagaatttcagca |
72 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36410732 |
aaccaaccaatacaacataacaaacaagattaagaagaatttcagca |
36410778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University