View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_high_11 (Length: 481)
Name: NF5311_high_11
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 462
Target Start/End: Original strand, 6923033 - 6923482
Alignment:
| Q |
11 |
atcatcaattcataacagacgaccacaatcaaggacacataatttgnnnnnnnntctataatccacgcatgtagtggtactccatatatcctcacccaag |
110 |
Q |
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| T |
6923033 |
atcatcaattcataacagacgaccacaatcaaggacacataatttgaaaaaa--tctatattccacgcatgtagtggtactccatatatcctcacccaag |
6923130 |
T |
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| Q |
111 |
aacctctttcgcgaatcaatgtgttcttattccattgaactggtttggagnnnnnnntattaaaataatcaacaacttccgataaaataatactaacatc |
210 |
Q |
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| T |
6923131 |
aacctctttcgcgaatcaatgtgtccttattccattgaactagtttggagaaaaaattattaaaataatcaacaacttccgataaaataatactaacatc |
6923230 |
T |
|
| Q |
211 |
tccatcatccaaagctcgcaaaaacaccttgttagctcccaatggaataatgacaagtttaacaaaacccgcatcataaatctaacgttgtaacactagt |
310 |
Q |
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| T |
6923231 |
tccatcatccaaagctcgcaaaaacaccttgttagctcccaatggaataatgacaagtttaacaaaacccgcatcataaatctgacgttgtaacactagt |
6923330 |
T |
|
| Q |
311 |
atggcatctccgttcaagacaaacaccaccacgcctttcgttgcccaagtcaagtcattaacagtagaattatgtttgggaacgtacacttgtttacatt |
410 |
Q |
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| T |
6923331 |
atggcatctccgttcaagacaaacaccaccacgcctttcgttgcccaagtcaagtcattaacagtagaattatgtttgggaacgtacacttgtttacatt |
6923430 |
T |
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| Q |
411 |
ccaactcactactacttcccatccctcctacaataacaggaaaagcctcctc |
462 |
Q |
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| T |
6923431 |
ccaactcactactacttcccatccctcctacaataacaggaaaagcctcctc |
6923482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 186 - 379
Target Start/End: Complemental strand, 20505895 - 20505702
Alignment:
| Q |
186 |
cttccgataaaataatactaacatctccatcatccaaagctcgcaaaaacaccttgttagctcccaatggaataatgacaagtttaacaaaacccgcatc |
285 |
Q |
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|||| |||||||| | ||| ||||||| ||||||| || || |||||||||||||| ||||||||| |||||||| ||||| || |||| ||||| || |
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| T |
20505895 |
cttctgataaaattaaactgacatctctgtcatccatagttctcaaaaacaccttgtcagctcccaacggaataattacaagattttcaaagcccgcgtc |
20505796 |
T |
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| Q |
286 |
ataaatctaacgttgtaacactagtatggcatctccgttcaagacaaacaccaccacgcctttcgttgcccaagtcaagtcattaacagtagaa |
379 |
Q |
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| T |
20505795 |
aaaaattcggcgttgtagcataggtatggcatctccattcaagacagacaccaccacacccttcgtcgcccacgacatatcattaacagtagaa |
20505702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 13152986 - 13152917
Alignment:
| Q |
236 |
accttgttagctcccaatggaataatgacaagtttaacaaaacccgcatcataaatctaacgttgtaaca |
305 |
Q |
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||||||| ||| ||||| ||||||||||| | || |||| |||||||||||||||| ||||||||||| |
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| T |
13152986 |
accttgtcagcgcccaaaggaataatgaccaaattttcaaaccccgcatcataaatctgacgttgtaaca |
13152917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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