View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5311_high_14 (Length: 445)

Name: NF5311_high_14
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5311_high_14
NF5311_high_14
[»] chr7 (16 HSPs)
chr7 (172-400)||(30005620-30005849)
chr7 (13-110)||(30005501-30005598)
chr7 (171-239)||(15996157-15996225)
chr7 (180-238)||(34670403-34670461)
chr7 (172-241)||(23097530-23097599)
chr7 (171-242)||(2399741-2399812)
chr7 (172-243)||(12810336-12810406)
chr7 (171-236)||(14574999-14575064)
chr7 (171-243)||(17801423-17801495)
chr7 (171-231)||(21955374-21955433)
chr7 (176-228)||(36720211-36720263)
chr7 (171-243)||(40992772-40992844)
chr7 (211-241)||(26982793-26982823)
chr7 (211-241)||(43250420-43250450)
chr7 (211-239)||(4132418-4132446)
chr7 (215-243)||(38646193-38646221)
[»] chr1 (23 HSPs)
chr1 (176-242)||(5368820-5368886)
chr1 (171-241)||(8900835-8900905)
chr1 (171-243)||(11900869-11900941)
chr1 (171-239)||(49166639-49166707)
chr1 (171-240)||(5346992-5347061)
chr1 (176-231)||(41944816-41944871)
chr1 (171-238)||(34890227-34890294)
chr1 (171-241)||(35489238-35489308)
chr1 (171-242)||(37247613-37247684)
chr1 (180-242)||(25395946-25396007)
chr1 (210-243)||(1609991-1610024)
chr1 (171-228)||(5700076-5700133)
chr1 (210-243)||(35489224-35489257)
chr1 (176-241)||(43946437-43946501)
chr1 (171-242)||(24419561-24419632)
chr1 (209-239)||(897090-897120)
chr1 (210-243)||(8900821-8900854)
chr1 (210-243)||(24419613-24419646)
chr1 (210-239)||(37247603-37247632)
chr1 (210-243)||(49166688-49166721)
chr1 (211-243)||(1610031-1610063)
chr1 (179-231)||(36618857-36618909)
chr1 (172-224)||(38133436-38133488)
[»] chr8 (21 HSPs)
chr8 (176-241)||(14113259-14113324)
chr8 (176-239)||(1784120-1784183)
chr8 (176-241)||(6590829-6590894)
chr8 (171-239)||(24185573-24185641)
chr8 (176-239)||(44329188-44329251)
chr8 (176-241)||(6649119-6649184)
chr8 (182-239)||(42158433-42158490)
chr8 (171-243)||(20694446-20694518)
chr8 (171-239)||(40737854-40737921)
chr8 (171-239)||(8168948-8169016)
chr8 (171-243)||(30358618-30358694)
chr8 (171-239)||(429807-429875)
chr8 (205-241)||(11322591-11322627)
chr8 (211-241)||(158456-158486)
chr8 (210-240)||(1157034-1157064)
chr8 (210-239)||(13325126-13325155)
chr8 (176-241)||(14110128-14110193)
chr8 (205-241)||(1214011-1214047)
chr8 (211-243)||(27988160-27988192)
chr8 (211-243)||(28045462-28045494)
chr8 (171-239)||(44803844-44803912)
[»] chr2 (9 HSPs)
chr2 (179-242)||(41517413-41517476)
chr2 (176-239)||(14725257-14725320)
chr2 (176-231)||(43445076-43445131)
chr2 (172-239)||(33956317-33956384)
chr2 (177-239)||(27279518-27279580)
chr2 (178-237)||(9895581-9895639)
chr2 (210-239)||(8996754-8996783)
chr2 (171-231)||(11565042-11565102)
chr2 (205-241)||(22857837-22857873)
[»] chr5 (21 HSPs)
chr5 (172-238)||(30046349-30046415)
chr5 (171-241)||(19522559-19522629)
chr5 (171-239)||(14509862-14509930)
chr5 (174-238)||(8355581-8355645)
chr5 (176-239)||(8567922-8567985)
chr5 (176-239)||(31146704-31146767)
chr5 (171-241)||(14751154-14751224)
chr5 (171-243)||(7065626-7065698)
chr5 (171-239)||(32522559-32522627)
chr5 (172-239)||(28499813-28499880)
chr5 (171-228)||(10244034-10244091)
chr5 (171-239)||(5865882-5865950)
chr5 (176-227)||(2969935-2969986)
chr5 (172-239)||(20269484-20269551)
chr5 (172-243)||(22398087-22398158)
chr5 (210-241)||(26221053-26221084)
chr5 (210-239)||(5240257-5240286)
chr5 (210-239)||(5240306-5240335)
chr5 (210-242)||(14338899-14338931)
chr5 (187-243)||(28351002-28351057)
chr5 (210-238)||(29486530-29486558)
[»] chr4 (26 HSPs)
chr4 (176-241)||(10065112-10065177)
chr4 (171-239)||(38562167-38562235)
chr4 (176-237)||(52378720-52378781)
chr4 (171-241)||(6371944-6372014)
chr4 (171-241)||(54918986-54919056)
chr4 (176-241)||(20783718-20783783)
chr4 (172-223)||(17236164-17236215)
chr4 (171-227)||(8678986-8679042)
chr4 (171-238)||(52840309-52840375)
chr4 (209-241)||(52673677-52673709)
chr4 (210-241)||(22720535-22720566)
chr4 (211-241)||(2198077-2198107)
chr4 (211-241)||(22720587-22720617)
chr4 (172-242)||(23673385-23673454)
chr4 (210-239)||(21861082-21861111)
chr4 (210-239)||(21916945-21916974)
chr4 (210-239)||(22923690-22923719)
chr4 (210-239)||(22928343-22928372)
chr4 (210-239)||(22984622-22984651)
chr4 (210-239)||(22998210-22998239)
chr4 (210-238)||(15794796-15794824)
chr4 (210-238)||(22768176-22768204)
chr4 (210-242)||(24100791-24100823)
chr4 (210-242)||(24100888-24100920)
chr4 (211-243)||(38562153-38562185)
chr4 (172-228)||(44626439-44626495)
[»] chr3 (11 HSPs)
chr3 (171-239)||(29212874-29212942)
chr3 (172-239)||(18093809-18093876)
chr3 (171-239)||(19790764-19790832)
chr3 (176-243)||(16867645-16867712)
chr3 (172-242)||(27696641-27696711)
chr3 (211-241)||(35239682-35239712)
chr3 (172-238)||(50334953-50335019)
chr3 (212-241)||(36344518-36344547)
chr3 (197-242)||(41067721-41067766)
chr3 (215-243)||(1779578-1779606)
chr3 (176-228)||(10937939-10937991)
[»] chr6 (12 HSPs)
chr6 (172-239)||(9910537-9910603)
chr6 (171-241)||(862851-862921)
chr6 (181-243)||(5069967-5070029)
chr6 (171-228)||(16260664-16260721)
chr6 (172-229)||(31159118-31159175)
chr6 (172-239)||(8051020-8051087)
chr6 (171-239)||(26296250-26296318)
chr6 (210-241)||(29938695-29938726)
chr6 (208-242)||(7632848-7632882)
chr6 (171-241)||(24252915-24252980)
chr6 (210-239)||(862902-862931)
chr6 (210-242)||(24252961-24252993)
[»] scaffold0514 (1 HSPs)
scaffold0514 (176-241)||(5849-5914)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 172 - 400
Target Start/End: Original strand, 30005620 - 30005849
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagttgnnnnnnn-gcttatatatgtgacttgag 270  Q
    ||||||||||||||||||||||| ||||||||||| |  ||| ||||||||||||||||||||||||| |||        |||||||||||||| | |||    
T  30005620 attgaataattaatgtatctaactcataaatgtgaccaaatatattaattattcaatgtatctaaaaatttgttttttttgcttatatatgtgattggag 30005719  T
Q  271 ggagtatataattaatgtatgattgagattatggtgagtatattagaattagagtgatttagtgatctttgtaggagctacaaagtttaatttatgaaaa 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  |||| ||||||||||||||||||||||||||||||||||    
T  30005720 ggagtatataattaatgtatgattgagattatggtgagtatattagaattatggtgattctgtgaactttgtaggagctacaaagtttaatttatgaaaa 30005819  T
Q  371 attatgatggatcatcgtgattataaatat 400  Q
    ||||||||||||||||||||||||||||||    
T  30005820 attatgatggatcatcgtgattataaatat 30005849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 30005501 - 30005598
Alignment:
Q  13 attacaaacctacaataatgatcttgtgggcaaataccaaacttaatttaaaagatgaatcaggcgtcccttgccataagcatactccctcctatcac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  30005501 attacaaacctacaataatgatcttgtgggcaaataccaaacttaatttaaaagatgaatgaggcgtcccttgccaaaagcatactccctcctatcac 30005598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 15996157 - 15996225
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  15996157 cattgaataattaatgtatctgacctataaacgtgattggatacattaattattcaatgtatctaaaaa 15996225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 34670403 - 34670461
Alignment:
Q  180 attaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaa 238  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  34670403 attaatgtatctaatacataaatgtgatcggatacattaattattcaatgtatttaaaa 34670461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 23097599 - 23097530
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    |||||||||||||||||| ||||  ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  23097599 attgaataattaatgtatttaacttataaatgtgatgggatacattaattgttcaatgtacctaaaaagt 23097530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 2399741 - 2399812
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagtt 242  Q
    ||||||||| ||||||||||||||  |||||||||| ||||||||||||||||||||| ||  |||||||||    
T  2399741 cattgaatagttaatgtatctaacttataaatgtgaccggatacattaattattcaatatacttaaaaagtt 2399812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 12810406 - 12810336
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagttg 243  Q
    ||||||||||||||||||||  ||  ||||||||| || |||||||||||||||||||||||||||| ||||    
T  12810406 attgaataattaatgtatctggcct-taaatgtgaccgaatacattaattattcaatgtatctaaaacgttg 12810336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 14574999 - 14575064
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaa 236  Q
    |||| |||||||||||||||| ||| ||||| || || |||||||||||||||| |||||||||||    
T  14574999 cattaaataattaatgtatctgaccaataaacgttattggatacattaattattaaatgtatctaa 14575064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 17801423 - 17801495
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagttg 243  Q
    |||| ||||| ||||||||||||   |||||||| |   |||||||||||||||||||| |||||||||||||    
T  17801423 catttaataactaatgtatctaatttataaatgttactagatacattaattattcaatgaatctaaaaagttg 17801495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 21955433 - 21955374
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgta 231  Q
    ||||||||||||| ||||||| ||  ||||||||||  |||||||||||||||||||||||    
T  21955433 cattgaataatta-tgtatctgacatataaatgtgactggatacattaattattcaatgta 21955374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 36720211 - 36720263
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaat 228  Q
    ||||| |||||||| ||||  |||||||||||| |||||||||||||||||||    
T  36720211 aataactaatgtatataacatataaatgtgatcagatacattaattattcaat 36720263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 40992772 - 40992844
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagttg 243  Q
    |||| |||||||||||||  | ||  |||||||||| | ||| ||||||||||||||||||| ||||||||||    
T  40992772 cattaaataattaatgtacatgacttataaatgtgaccagatgcattaattattcaatgtatttaaaaagttg 40992844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 26982823 - 26982793
Alignment:
Q  211 atacattaattattcaatgtatctaaaaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  26982823 atacattaattattcaatgtatctaaaaagt 26982793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 43250420 - 43250450
Alignment:
Q  211 atacattaattattcaatgtatctaaaaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  43250420 atacattaattattcaatgtatctaaaaagt 43250450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 4132446 - 4132418
Alignment:
Q  211 atacattaattattcaatgtatctaaaaa 239  Q
    |||||||||||||||||||||||||||||    
T  4132446 atacattaattattcaatgtatctaaaaa 4132418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 38646221 - 38646193
Alignment:
Q  215 attaattattcaatgtatctaaaaagttg 243  Q
    |||||||||||||||||||||||||||||    
T  38646221 attaattattcaatgtatctaaaaagttg 38646193  T

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Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 5368820 - 5368886
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagtt 242  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  5368820 aataattaatgtatctaacccataaatgtgaccggatacattaattattcaatgcatctaaaaagtt 5368886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 8900835 - 8900905
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||||    
T  8900835 cattgaataattaatgtatctaacctataaatgtgaccggatacattaattattcaatatacctaaaaagt 8900905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 11900869 - 11900941
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagttg 243  Q
    ||||||||||||||||||| | ||| |||||||||| | |||| |||||||||||||||||||||||||||||    
T  11900869 cattgaataattaatgtatttgacctataaatgtgaccagatatattaattattcaatgtatctaaaaagttg 11900941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 49166707 - 49166639
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||| |||||||    
T  49166707 cattgaataattaatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 49166639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 5347061 - 5346992
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaag 240  Q
    ||||||||||||||| |||||||   ||||||||||  ||||||||||||||||||||||||||||||||    
T  5347061 cattgaataattaatatatctaatatataaatgtgaatggatacattaattattcaatgtatctaaaaag 5346992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 41944816 - 41944871
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgta 231  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  41944816 aataattaatgtatctaacccataaatgtgaccgggtacattaattattcattgta 41944871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 34890227 - 34890294
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaa 238  Q
    |||||||||| |||| ||||||||  |||||||| | |||||||||||||||||||||| ||||||||    
T  34890227 cattgaataactaatatatctaacatataaatgtaaccggatacattaattattcaatgaatctaaaa 34890294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 35489238 - 35489308
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||||||||||||||||| |||||| | | | ||| ||||||||||||||||||  ||||||||    
T  35489238 cattgaataattaatgtatctaacctataaatatcaccagattcattaattattcaatgtacataaaaagt 35489308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 37247613 - 37247684
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagtt 242  Q
    ||||||||||||||||||||||||| |||||||| |  | |||  ||||||||| ||||||| |||||||||    
T  37247613 cattgaataattaatgtatctaacctataaatgtaactgtatatgttaattattaaatgtatttaaaaagtt 37247684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 25396007 - 25395946
Alignment:
Q  180 attaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagtt 242  Q
    |||||||||||| |||  ||||| ||||  |||||||||||||||||||||||||||||||||    
T  25396007 attaatgtatctgacct-taaatatgattagatacattaattattcaatgtatctaaaaagtt 25395946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 1610024 - 1609991
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagttg 243  Q
    ||||||||||||||||||||||||||||||||||    
T  1610024 gatacattaattattcaatgtatctaaaaagttg 1609991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 5700133 - 5700076
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaat 228  Q
    |||||||||||||||| || | | | |||||| |||||||||||||||||||||||||    
T  5700133 cattgaataattaatgcatttgatctataaatatgatcggatacattaattattcaat 5700076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 35489257 - 35489224
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagttg 243  Q
    ||||||||||||||||||||||||||||||||||    
T  35489257 gatacattaattattcaatgtatctaaaaagttg 35489224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 43946501 - 43946437
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||| |||||| |||||||||||| | |||||||||||||||  ||||| |||||||||    
T  43946501 aataattaatgcatctaatccataaatgtga-ccgatacattaattatttgatgtacctaaaaagt 43946437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 24419632 - 24419561
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagtt 242  Q
    ||||||||||||||||||||| ||  |||| | |||  |||||||||| || ||||||| ||||||||||||    
T  24419632 cattgaataattaatgtatctgacttataattatgactggatacattagttcttcaatgaatctaaaaagtt 24419561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 897090 - 897120
Alignment:
Q  209 ggatacattaattattcaatgtatctaaaaa 239  Q
    |||||||||||||||||||||||||||||||    
T  897090 ggatacattaattattcaatgtatctaaaaa 897120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 8900854 - 8900821
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagttg 243  Q
    |||||||||||||||||||||| |||||||||||    
T  8900854 gatacattaattattcaatgtacctaaaaagttg 8900821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 24419613 - 24419646
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagttg 243  Q
    |||||||||||||||||||||| |||||||||||    
T  24419613 gatacattaattattcaatgtacctaaaaagttg 24419646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 37247632 - 37247603
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  37247632 gatacattaattattcaatgtatctaaaaa 37247603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 49166688 - 49166721
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagttg 243  Q
    |||||||||||||||||||||| |||||||||||    
T  49166688 gatacattaattattcaatgtaactaaaaagttg 49166721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 1610031 - 1610063
Alignment:
Q  211 atacattaattattcaatgtatctaaaaagttg 243  Q
    ||||||||||||||||||||||| |||||||||    
T  1610031 atacattaattattcaatgtatcgaaaaagttg 1610063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 36618857 - 36618909
Alignment:
Q  179 aattaatgtatctaacccataaatgtgatcggatacattaattattcaatgta 231  Q
    |||||| |||||| ||  ||||||||||| | |||||||||||||||||||||    
T  36618857 aattaacgtatctgacttataaatgtgattgaatacattaattattcaatgta 36618909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 38133488 - 38133436
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattatt 224  Q
    |||||||||||||| ||| | ||| |||||| ||||| |||||||||||||||    
T  38133488 attgaataattaatatatttgacctataaatatgatcagatacattaattatt 38133436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 14113259 - 14113324
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  14113259 aataattaatgtatctaacccataaatgtgaccgtatacattaattattcaatgtatctaaaaagt 14113324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 1784183 - 1784120
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  1784183 aataattaatgtatctaacccataaatatgaccggatacattaaatattcaatgtatctaaaaa 1784120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 6590829 - 6590894
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  6590829 aataatcaatgtatctaacccataaatatgaccggatacattaattattcaatgtacctaaaaagt 6590894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 24185573 - 24185641
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||| |||||||    
T  24185573 cattgaataattaatatatctaacctataaatgtgactggatacattaattattcaatgtacctaaaaa 24185641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 44329251 - 44329188
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||| ||||||    
T  44329251 aataattaatgtatctaacccataaatgtgaccaaatacattaattattcaatgtatttaaaaa 44329188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 6649119 - 6649184
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    |||||| |||||||||||||||| ||| ||| |||||||||||||||||||||||| |||||||||    
T  6649119 aataatcaatgtatctaacccatgaatatgaccggatacattaattattcaatgtacctaaaaagt 6649184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 42158433 - 42158490
Alignment:
Q  182 taatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  42158433 taatgtatctaactcataaatgtgactggatacattaattattcaatgtatctaaaaa 42158490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 20694518 - 20694446
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagttg 243  Q
    ||||||||| | ||||||||||||| ||||||||||   |||| |||||||||||||||||||||||||||||    
T  20694518 cattgaatagtcaatgtatctaacctataaatgtgacttgataaattaattattcaatgtatctaaaaagttg 20694446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 40737921 - 40737854
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||| |||  ||||||||| |||||||||||||||||||||||||| |||||    
T  40737921 cattgaataattaatgtatctgacct-taaatgtgaccggatacattaattattcaatgtatcaaaaaa 40737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 8168948 - 8169016
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||| | | ||||||||||| | ||| |||||| ||||||||||| ||||||    
T  8168948 cattgaataattaatgtatctgatctataaatgtgattgcatatattaatcattcaatgtatataaaaa 8169016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 30358618 - 30358694
Alignment:
Q  171 cattgaataattaatgtatctaac----ccataaatgtgatcggatacattaattattcaatgtatctaaaaagttg 243  Q
    |||||||||||||||||||||||     | |||||||||| ||||||||||| ||||||||| || |||||||||||    
T  30358618 cattgaataattaatgtatctaattaatctataaatgtgaccggatacattatttattcaatatacctaaaaagttg 30358694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 429807 - 429875
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    |||||||| |||||| ||| | ||| ||||||||||  | ||||||| |||||||||||||||||||||    
T  429807 cattgaattattaatatatttgacctataaatgtgactgaatacattgattattcaatgtatctaaaaa 429875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 11322627 - 11322591
Alignment:
Q  205 gatcggatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||||||||||||||||| |||||||||||    
T  11322627 gatcggatacattaattattcaatgcatctaaaaagt 11322591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 158486 - 158456
Alignment:
Q  211 atacattaattattcaatgtatctaaaaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  158486 atacattaattattcaatgtatctaaaaagt 158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 1157064 - 1157034
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaag 240  Q
    |||||||||||||||||||||||||||||||    
T  1157064 gatacattaattattcaatgtatctaaaaag 1157034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 13325155 - 13325126
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  13325155 gatacattaattattcaatgtatctaaaaa 13325126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 14110128 - 14110193
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    ||||| |||||||| ||||| ||||||||||  | ||  ||||||| |||||||||||||||||||    
T  14110128 aataactaatgtatttaaccgataaatgtgactgaatctattaattcttcaatgtatctaaaaagt 14110193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 1214011 - 1214047
Alignment:
Q  205 gatcggatacattaattattcaatgtatctaaaaagt 241  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  1214011 gatcgggtacattaattattcaatatatctaaaaagt 1214047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 27988160 - 27988192
Alignment:
Q  211 atacattaattattcaatgtatctaaaaagttg 243  Q
    ||||||||||||||||||| |||||||||||||    
T  27988160 atacattaattattcaatgaatctaaaaagttg 27988192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 28045462 - 28045494
Alignment:
Q  211 atacattaattattcaatgtatctaaaaagttg 243  Q
    ||||||||||||||||||| |||||||||||||    
T  28045462 atacattaattattcaatgaatctaaaaagttg 28045494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 44803912 - 44803844
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||| |||||||||  || |||| | |||||||||||||||  |||| |||| |||||||||    
T  44803912 cattgaataatcaatgtatcttgcctataattatgatcggatacattagatatttaatgaatctaaaaa 44803844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 41517413 - 41517476
Alignment:
Q  179 aattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagtt 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  41517413 aattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtacttaaaaagtt 41517476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 14725257 - 14725320
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  14725257 aataattaatgtatctaactcataaatctgatcggatacattaattattcaatgtatataaaaa 14725320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 43445076 - 43445131
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgta 231  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43445076 aataattaatgtatctaacccataaatgtgaccggatacattaattattcaatgta 43445131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 33956384 - 33956317
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    |||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||||||| ||||||    
T  33956384 attgaataattaatgtatctaacttataaatatgaccggatacattaattattcaatgtatataaaaa 33956317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 27279580 - 27279518
Alignment:
Q  177 ataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||| ||| |||| | ||||||||||||||| |||||||||| | |||||||    
T  27279580 ataattaatgtatctgacctataattatgatcggatacattagttattcaatgaacctaaaaa 27279518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 9895639 - 9895581
Alignment:
Q  178 taattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaa 237  Q
    |||||||||||||||||| ||||||||||   |||||||||| ||||||||||| |||||    
T  9895639 taattaatgtatctaacctataaatgtgactagatacattaa-tattcaatgtaactaaa 9895581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 8996783 - 8996754
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  8996783 gatacattaattattcaatgtatctaaaaa 8996754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 11565042 - 11565102
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgta 231  Q
    |||||||||||||||||| || | | ||||||||||  ||||||||||| |||| ||||||    
T  11565042 cattgaataattaatgtacctgatctataaatgtgactggatacattaaatattgaatgta 11565102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 22857873 - 22857837
Alignment:
Q  205 gatcggatacattaattattcaatgtatctaaaaagt 241  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  22857873 gatcagatacataaattattcaatgtatctaaaaagt 22857837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 30046349 - 30046415
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaa 238  Q
    |||||||| ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||    
T  30046349 attgaatagttaatgtatctaacctataaatgtggccggatacattaattattcaatgtatctaaaa 30046415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 19522559 - 19522629
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    |||| |||||||||||||||||||||||||||||||||  ||| |||||||||| |||||| |||||||||    
T  19522559 cattcaataattaatgtatctaacccataaatgtgatcaaatatattaattatttaatgtacctaaaaagt 19522629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 14509862 - 14509930
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    |||| |||||||||||||| |||| ||||||| |||| |||||||||||||||||||| ||||||||||    
T  14509862 cattcaataattaatgtatttaactcataaatatgattggatacattaattattcaatatatctaaaaa 14509930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 8355645 - 8355581
Alignment:
Q  174 tgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaa 238  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||||| ||| ||| |||||    
T  8355645 tgaataattaatgtatccaacatataaatgtgatcggatacattaattatttaatatatttaaaa 8355581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 8567922 - 8567985
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||| ||| |||||||||||   ||||||||||||||||||||||| ||||||    
T  8567922 aataattaatgtatccaactcataaatgtgacaagatacattaattattcaatgtatttaaaaa 8567985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 31146767 - 31146704
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||||| | || |||||||||    
T  31146767 aataattattgtatctaaccaaaaaatgtgatcggatacattaattatttattgcatctaaaaa 31146704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 14751224 - 14751154
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||| || |||||||||||| |||||||| |  ||||||||||||||||||||| | |||||||||    
T  14751224 cattgaatagttgatgtatctaacctataaatgtaactggatacattaattattcaatgcacctaaaaagt 14751154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 7065626 - 7065698
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagttg 243  Q
    |||||||||| ||||| |||  ||  |||||||||||| |||||||||||||||||||| || ||||||||||    
T  7065626 cattgaataactaatgcatcagacatataaatgtgatcagatacattaattattcaatgaatttaaaaagttg 7065698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 32522627 - 32522559
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||| | | ||||||||||  | |||||||||||||||||| |||| |||||    
T  32522627 cattgaataattaatgtatctgatctataaatgtgactgcatacattaattattcaatatatcaaaaaa 32522559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 28499880 - 28499813
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    |||||||||||||||||| ||| | |||| | ||| ||||||||||| |||||||||| |||||||||    
T  28499880 attgaataattaatgtatttaatctataattatgaccggatacattagttattcaatgaatctaaaaa 28499813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 10244034 - 10244091
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaat 228  Q
    ||||| ||||||||||||||| ||| ||||||||||   |||||||||||||||||||    
T  10244034 cattggataattaatgtatctgacctataaatgtgaatagatacattaattattcaat 10244091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 5865882 - 5865950
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    |||| ||||| |||||||||||||  |||||||||| |||||| || |||||||||||| | |||||||    
T  5865882 catttaataactaatgtatctaacatataaatgtgaccggatatatcaattattcaatgaacctaaaaa 5865950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 2969935 - 2969986
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaa 227  Q
    |||||||||| |||||||| ||||||||||| || |||||||| ||||||||    
T  2969935 aataattaatatatctaactcataaatgtgaccgaatacattagttattcaa 2969986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 20269484 - 20269551
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||| |||||||| ||| | |||| |||    |||||||||||||||||||||||||||||    
T  20269484 attgaataattgatgtatctgacctacaaatatgacgaaatacattaattattcaatgtatctaaaaa 20269551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 22398087 - 22398158
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagttg 243  Q
    |||||||||||| ||||| ||  | |||||| ||| |  ||||||||||||||||||| |||||||||||||    
T  22398087 attgaataattattgtatatagtctataaatatgaccaaatacattaattattcaatgaatctaaaaagttg 22398158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 241
Target Start/End: Complemental strand, 26221084 - 26221053
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||||||||||||||||||||||||    
T  26221084 gatacattaattattcaatgtatctaaaaagt 26221053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 5240286 - 5240257
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  5240286 gatacattaattattcaatgtatctaaaaa 5240257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 5240306 - 5240335
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  5240306 gatacattaattattcaatgtatctaaaaa 5240335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 14338899 - 14338931
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagtt 242  Q
    ||||||| |||||||||||||||||||||||||    
T  14338899 gatacataaattattcaatgtatctaaaaagtt 14338931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 28351002 - 28351057
Alignment:
Q  187 tatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagttg 243  Q
    ||||||||| ||||||  || ||||||||||| |||||||||| |||||||||||||    
T  28351002 tatctaacctataaata-gaccggatacattagttattcaatgaatctaaaaagttg 28351057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 29486558 - 29486530
Alignment:
Q  210 gatacattaattattcaatgtatctaaaa 238  Q
    |||||||||||||||||||||||||||||    
T  29486558 gatacattaattattcaatgtatctaaaa 29486530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 10065112 - 10065177
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||    
T  10065112 aataattaatgtatctaactcataaatatggtcggatacattaattattcaatgtacctaaaaagt 10065177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 38562167 - 38562235
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||| |  || |||||||||| ||||||||||||||||||||||||||||||||    
T  38562167 cattgaataattaatgtatatgtcctataaatgtgaccggatacattaattattcaatgtatctaaaaa 38562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 52378720 - 52378781
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaa 237  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||| ||||||||    
T  52378720 aataattaatgtatctaactcataaatgtgatcaaatacattaattattcaatatatctaaa 52378781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 6372014 - 6371944
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    |||| ||||| ||||||||||||||||||||||| | |  ||||||||||||||||||||| |||||||||    
T  6372014 catttaataactaatgtatctaacccataaatgtaaccatatacattaattattcaatgtacctaaaaagt 6371944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 54918986 - 54919056
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    |||| |||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||  ||||||||    
T  54918986 cattcaataattaatgtatctaacctataaacgtgaccggatacattagttattcaatgtacttaaaaagt 54919056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 20783783 - 20783718
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    |||||||||||||| |||  ||||||||||||| ||||||||||||||||||||||  ||||||||    
T  20783783 aataattaatgtatttaatacataaatgtgatcagatacattaattattcaatgtacttaaaaagt 20783718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 17236215 - 17236164
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattat 223  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  17236215 attgaataattaatgtatttaacctataaatgtgaccggatacattaattat 17236164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 8679042 - 8678986
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaa 227  Q
    |||||||||  |||||||||||||  |||||||||| ||||||||||||||||||||    
T  8679042 cattgaatacctaatgtatctaacatataaatgtgaccggatacattaattattcaa 8678986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 52840309 - 52840375
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaa 238  Q
    |||| |||||||||||||||||||  |||||||||| | ||||||||||||||| |||| ||||||||    
T  52840309 cattaaataattaatgtatctaacatataaatgtga-ccgatacattaattatttaatgaatctaaaa 52840375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 52673677 - 52673709
Alignment:
Q  209 ggatacattaattattcaatgtatctaaaaagt 241  Q
    |||||||||||||||||||||||||||||||||    
T  52673677 ggatacattaattattcaatgtatctaaaaagt 52673709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 241
Target Start/End: Complemental strand, 22720566 - 22720535
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||||||||||||||||||||||||    
T  22720566 gatacattaattattcaatgtatctaaaaagt 22720535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 2198107 - 2198077
Alignment:
Q  211 atacattaattattcaatgtatctaaaaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  2198107 atacattaattattcaatgtatctaaaaagt 2198077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 22720587 - 22720617
Alignment:
Q  211 atacattaattattcaatgtatctaaaaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  22720587 atacattaattattcaatgtatctaaaaagt 22720617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 23673454 - 23673385
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagtt 242  Q
    |||||||||||||||||||| ||  ||| |||||| |  ||||||||||||||| |||||| |||||||||    
T  23673454 attgaataattaatgtatctgacatatatatgtgaccaaatacattaattattcgatgtat-taaaaagtt 23673385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 21861111 - 21861082
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  21861111 gatacattaattattcaatgtatctaaaaa 21861082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 21916974 - 21916945
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  21916974 gatacattaattattcaatgtatctaaaaa 21916945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 22923719 - 22923690
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  22923719 gatacattaattattcaatgtatctaaaaa 22923690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 22928372 - 22928343
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  22928372 gatacattaattattcaatgtatctaaaaa 22928343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 22984651 - 22984622
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  22984651 gatacattaattattcaatgtatctaaaaa 22984622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 22998239 - 22998210
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  22998239 gatacattaattattcaatgtatctaaaaa 22998210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 15794824 - 15794796
Alignment:
Q  210 gatacattaattattcaatgtatctaaaa 238  Q
    |||||||||||||||||||||||||||||    
T  15794824 gatacattaattattcaatgtatctaaaa 15794796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 22768204 - 22768176
Alignment:
Q  210 gatacattaattattcaatgtatctaaaa 238  Q
    |||||||||||||||||||||||||||||    
T  22768204 gatacattaattattcaatgtatctaaaa 22768176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 24100823 - 24100791
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagtt 242  Q
    |||||||||||||||||||| ||||||||||||    
T  24100823 gatacattaattattcaatgaatctaaaaagtt 24100791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 24100888 - 24100920
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagtt 242  Q
    |||||||||||||||||||| ||||||||||||    
T  24100888 gatacattaattattcaatgaatctaaaaagtt 24100920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 38562185 - 38562153
Alignment:
Q  211 atacattaattattcaatgtatctaaaaagttg 243  Q
    |||||||||||||||||||||||||| ||||||    
T  38562185 atacattaattattcaatgtatctaacaagttg 38562153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 44626495 - 44626439
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaat 228  Q
    |||||||||| ||||||||||||| || ||||||| |  ||| ||||||||||||||    
T  44626495 attgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 44626439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 29212942 - 29212874
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||||||| ||||||||||    
T  29212942 cattgaataattaatgtatctgacctataaatgtgactggatacattgattattcaatatatctaaaaa 29212874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 18093876 - 18093809
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    |||||||||||||||||||| ||| ||||||||||   ||||||||||||||||||||||| ||||||    
T  18093876 attgaataattaatgtatctgacctataaatgtgacaagatacattaattattcaatgtatttaaaaa 18093809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 19790764 - 19790832
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    |||||||||||||||||| || ||| ||||||||||| | |||||| || |||||||||||||||||||    
T  19790764 cattgaataattaatgtaccttacctataaatgtgattgcatacatcaagtattcaatgtatctaaaaa 19790832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 16867712 - 16867645
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagttg 243  Q
    ||||||| ||||||||||||||||||| ||| || || ||||| |||||||||||| |||||||||||    
T  16867712 aataattgatgtatctaacccataaatatgaccgaatgcattagttattcaatgtacctaaaaagttg 16867645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 27696711 - 27696641
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagtt 242  Q
    |||||||||  | ||||||||||  ||||||||||||||||||||||| |||| |||  || |||||||||    
T  27696711 attgaataacaattgtatctaacttataaatgtgatcggatacattaaatatttaataaatttaaaaagtt 27696641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 35239712 - 35239682
Alignment:
Q  211 atacattaattattcaatgtatctaaaaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  35239712 atacattaattattcaatgtatctaaaaagt 35239682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 50335019 - 50334953
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaa 238  Q
    ||||||||||||||||||  |||| ||||    |||  |||||||||||||||||||||||||||||    
T  50335019 attgaataattaatgtatacaacctataataaagattagatacattaattattcaatgtatctaaaa 50334953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 36344518 - 36344547
Alignment:
Q  212 tacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||||||||||||||||||||||    
T  36344518 tacattaattattcaatgtatctaaaaagt 36344547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 41067721 - 41067766
Alignment:
Q  197 ataaatgtgatcggatacattaattattcaatgtatctaaaaagtt 242  Q
    |||||||||||  ||||| ||||||||||||||||| |||||||||    
T  41067721 ataaatgtgattagataccttaattattcaatgtatttaaaaagtt 41067766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 1779578 - 1779606
Alignment:
Q  215 attaattattcaatgtatctaaaaagttg 243  Q
    |||||||||||||||||||||||||||||    
T  1779578 attaattattcaatgtatctaaaaagttg 1779606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 10937991 - 10937939
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaat 228  Q
    |||||||||| ||||||| | |||||||||| | |||| ||||||||||||||    
T  10937991 aataattaatatatctaatctataaatgtgacccgatatattaattattcaat 10937939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 9910537 - 9910603
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| || |||||||    
T  9910537 attgaataattaatgtatctaacctataaa-gtgaccggatacattaattattcaatatacctaaaaa 9910603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 862921 - 862851
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||  | |||||||||||| |||||||||    
T  862921 cattgaataattaatgtatctaacctataaatgtgactggatacaccagttattcaatgtacctaaaaagt 862851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 5070029 - 5069967
Alignment:
Q  181 ttaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagttg 243  Q
    ||||||||||||||| || ||| ||  ||||||||||||||||||||||||||||||||||||    
T  5070029 ttaatgtatctaacctattaatatggccggatacattaattattcaatgtatctaaaaagttg 5069967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 16260664 - 16260721
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaat 228  Q
    ||||||||||||||||| ||||||| ||||||||||  | ||||||||||||||||||    
T  16260664 cattgaataattaatgtctctaacctataaatgtgactgaatacattaattattcaat 16260721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 31159175 - 31159118
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatg 229  Q
    ||||||||| |||||||||||||  |||||||||| || |||||||||||||||||||    
T  31159175 attgaataactaatgtatctaacatataaatgtgaccgaatacattaattattcaatg 31159118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 8051020 - 8051087
Alignment:
Q  172 attgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    |||||||||||||||||| ||| | |||||||||||   |||||||||||||| |||||||| |||||    
T  8051020 attgaataattaatgtatataatctataaatgtgattaaatacattaattattaaatgtatccaaaaa 8051087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 26296250 - 26296318
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaa 239  Q
    |||| |||||||||||||| ||| | ||||||||||  | |||| ||||||||||||||||| ||||||    
T  26296250 cattaaataattaatgtatttaatctataaatgtgactgtatacgttaattattcaatgtatttaaaaa 26296318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 29938695 - 29938726
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||||||||||||||||||||||||    
T  29938695 gatacattaattattcaatgtatctaaaaagt 29938726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 7632848 - 7632882
Alignment:
Q  208 cggatacattaattattcaatgtatctaaaaagtt 242  Q
    ||||||||||||||||||| |||||||||||||||    
T  7632848 cggatacattaattattcagtgtatctaaaaagtt 7632882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 24252980 - 24252915
Alignment:
Q  171 cattgaataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    ||||||||||||||||||||||     ||||||||| || |||||||||||||||||| ||  ||||||||    
T  24252980 cattgaataattaatgtatcta-----taaatgtgaccgaatacattaattattcaatatacttaaaaagt 24252915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 862902 - 862931
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaa 239  Q
    ||||||||||||||||||||||||||||||    
T  862902 gatacattaattattcaatgtatctaaaaa 862931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 24252961 - 24252993
Alignment:
Q  210 gatacattaattattcaatgtatctaaaaagtt 242  Q
    |||||||||||||||||||||| ||||||||||    
T  24252961 gatacattaattattcaatgtacctaaaaagtt 24252993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 5914 - 5849
Alignment:
Q  176 aataattaatgtatctaacccataaatgtgatcggatacattaattattcaatgtatctaaaaagt 241  Q
    |||||| ||||||||||||| || ||  ||| ||||||||||| |||||||||||| |||||||||    
T  5914 aataatcaatgtatctaacctatgaagatgaccggatacattagttattcaatgtacctaaaaagt 5849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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