View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_high_18 (Length: 432)
Name: NF5311_high_18
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_18 |
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| [»] scaffold0464 (1 HSPs) |
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| [»] scaffold0242 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 19637779 - 19638183
Alignment:
| Q |
18 |
attgattgaaaaataaccgaataagcatagcaatccattgcaggaaccaacaggatagaggtatccatcgacgtccttcaatcggaaattaggtttgttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
19637779 |
attgattgaaaaataaccgaataagcatagcaatccgttgcaggaaccaacaggatagaggaatccatagacgtccttcaatcggaaattaggtttgttg |
19637878 |
T |
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| Q |
118 |
gctaggttgatggatttgttcttcagtaaacgacacagggagaaacctgcgatgctgaaataactagaatgtctgaatatgatcgaaaaaagtgctaggt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19637879 |
gctaggttgatggatttgttcttcagtaaacgacacagggagaaacctgcgatgctgaaataactagaatgtctgaataggatcgaaaaaagtgctaggt |
19637978 |
T |
|
| Q |
218 |
gcttgtttcttgctgatatcttaaggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttgaaacgcatcagata |
317 |
Q |
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| T |
19637979 |
gcttgtttcttgctgatatcttaaggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttgaaacgcatcagata |
19638078 |
T |
|
| Q |
318 |
tttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgcgcgaaattctagttccattgaaggtacgccgcaacttaggttga |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19638079 |
tttcaccgaaaggaatgataggacttccatgattagttcgtcagggaggaacacgcgcgaaattctagttccactgaaggtacgccgcaacttaggttga |
19638178 |
T |
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| Q |
418 |
tgatg |
422 |
Q |
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||||| |
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| T |
19638179 |
tgatg |
19638183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 207 - 377
Target Start/End: Original strand, 19598521 - 19598691
Alignment:
| Q |
207 |
aagtgctaggtgcttgtttcttgctgatatcttaaggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttgaaa |
306 |
Q |
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|||||| | ||| ||||||||||| ||| ||| ||||||| ||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||| |
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| T |
19598521 |
aagtgcaatgtgtttgtttcttgcagattgcttgaggtgtagtttgacaaaagtgggatgagagattagggttttccatgacttgcagacgcatttgaat |
19598620 |
T |
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| Q |
307 |
cgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgcgcga |
377 |
Q |
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||| ||| | || || | |||||||||||||| ||| | ||| ||||||||||||||||| ||| |||| |
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| T |
19598621 |
tgcacaagagaatttacaggaaggaatgataggatttcaacgataagttcatcagggaggaatacgagcga |
19598691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 367
Target Start/End: Original strand, 15572746 - 15572850
Alignment:
| Q |
263 |
gatcagagatgatggttttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagg |
362 |
Q |
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||||||||| | ||||||||| ||| ||||||| || || | ||||||||||||||||| |||||| ||||||||||||| || ||||||||||| |
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| T |
15572746 |
gatcagagaataaggttttccaggacctgcagacgcacttcatccgcatcagatatttcacttcaaggaacgataggacttccacaataagttcatcagg |
15572845 |
T |
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| Q |
363 |
gagga |
367 |
Q |
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||||| |
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| T |
15572846 |
gagga |
15572850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 19610199 - 19610308
Alignment:
| Q |
256 |
aaagtgggatcagagatgatggttttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagtt |
355 |
Q |
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||||||||||| || |||| | |||||||||||||||||| || || || ||||||||| ||||||||| || ||||| |||||||| |||||| | |
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| T |
19610199 |
aaagtgggatcggatatgagagctttccatgacttgcagacgcacttaaatcgcatcagagatttcaccgggagaaatgacaggacttcggtgattaact |
19610298 |
T |
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| Q |
356 |
catcagggag |
365 |
Q |
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||| |||||| |
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| T |
19610299 |
cattagggag |
19610308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 22088083 - 22088050
Alignment:
| Q |
34 |
ccgaataagcatagcaatccattgcaggaaccaa |
67 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
22088083 |
ccgaataagcaaagcaatccattgcaggaaccaa |
22088050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 22080343 - 22080311
Alignment:
| Q |
37 |
aataagcatagcaatccattgcaggaaccaaca |
69 |
Q |
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| T |
22080343 |
aataagcaaagcaatccattgcaggaaccaaca |
22080311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 373
Target Start/End: Original strand, 29598353 - 29598450
Alignment:
| Q |
276 |
ggttttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgc |
373 |
Q |
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|||||||||||||||||| ||||| | | ||||||||| ||| ||| | ||||||||| |||||||| ||| ||||||||||||||||| |||| |
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| T |
29598353 |
ggttttccatgacttgcacacacaccttagtcgcatcagagattgcacaggaaggaatgaaaggacttctgcgatgagttcatcagggaggaatacgc |
29598450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 7261 - 7213
Alignment:
| Q |
267 |
agagatgatggttttccatgacttgcagacacatttgaaacgcatcaga |
315 |
Q |
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|||||| | |||||||||||| ||||||||||||||||| |||||||| |
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| T |
7261 |
agagattagggttttccatgatttgcagacacatttgaattgcatcaga |
7213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 14559 - 14623
Alignment:
| Q |
241 |
aggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttgaa |
305 |
Q |
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||||||||||| ||||||||||||||||| || | ||||||||| | |||| ||||||||||| |
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| T |
14559 |
aggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaa |
14623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 23394 - 23458
Alignment:
| Q |
241 |
aggtgtaatttgacaaaagtgggatcagagatgatggttttccatgacttgcagacacatttgaa |
305 |
Q |
| |
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||||||||||| ||||||||||||||||| || | ||||||||| | |||| ||||||||||| |
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| T |
23394 |
aggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaa |
23458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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