View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_high_20 (Length: 412)
Name: NF5311_high_20
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 2899398 - 2899800
Alignment:
| Q |
1 |
tggatttgattaatttaaactgccaaaattaatcaattgatatatgaaaaattcatttaagggggttgacacctttcaatatcctaagttttttcataca |
100 |
Q |
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| T |
2899398 |
tggatttgattaatttaaactgcaaaaattaatcaattgatatatgaaaaattcatttaagggggttgacacctttcaatatcctaagttttttcataca |
2899497 |
T |
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| Q |
101 |
tacaagttgaagaacaaactttaaaccaaatgattaagagatttaaatatctataacctatttcacaccatgattgtaaagtggattcattttaaagtat |
200 |
Q |
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| T |
2899498 |
tacaagttgaagaacaaactttaaaccaaatgattaagagatttaagtatctataacctatttcacaccatgattgtaaagtggattcattttaaagtat |
2899597 |
T |
|
| Q |
201 |
aaagttatcattatcattggttaaaaaataaagagttgatattttcttacataccaaccagagatcaaactcttaaccaaatggttacgagacccaagta |
300 |
Q |
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| T |
2899598 |
aaagttatcattatcattggttaaaaaataaagagtcgatattttcttacataccaaccagagatcaaactcttaaccaaatggttacgagacccaagta |
2899697 |
T |
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| Q |
301 |
tttataacttgtgtcacaccatatcggctaaatgggttcattttaaagtcgaaagttatcgctatcaattattgattaacaaataaaaatttactagtat |
400 |
Q |
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| T |
2899698 |
tttataacttgtgtcacaccatatcggttaaatgggttcattttaaagttgaaagttatcgctatcaattattgattaacaaataaaaagttactagtat |
2899797 |
T |
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| Q |
401 |
tat |
403 |
Q |
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| T |
2899798 |
tat |
2899800 |
T |
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