View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_high_25 (Length: 385)
Name: NF5311_high_25
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_25 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 34567534 - 34567234
Alignment:
| Q |
15 |
aagaagatgagaaatttgaggaccagaactaactgcatgcattcgcttccaatattgaacttccacctgatcaaggattatatggataatatctctatac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34567534 |
aagaagatgagaaatttgaggaccagaactaactgcatgcattcgcttccaatattgaacttccacctgatcaagaattatatggataatatctctatac |
34567435 |
T |
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| Q |
115 |
gaataacagagataaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttag |
214 |
Q |
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| T |
34567434 |
gaataacaaaaataaggggagagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttag |
34567335 |
T |
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| Q |
215 |
gaaaagatatgcaatgatggattgtttgaatgacattagggggaatttacactcctccaaatagttctccacaaattcccaattgatgtgatcataatct |
314 |
Q |
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| T |
34567334 |
gaaaagatatgcaatgatggattgtttgaatgagattagggggaatttacactcctccaaatagttctccacaaatttccaattgctgtgatcataatct |
34567235 |
T |
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| Q |
315 |
c |
315 |
Q |
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| T |
34567234 |
c |
34567234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 34567232 - 34567198
Alignment:
| Q |
335 |
acaagaacatattgcttcttttcatcttagtcatg |
369 |
Q |
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| T |
34567232 |
acaagaacatattgcttcttttcatcttagtcatg |
34567198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 127 - 311
Target Start/End: Original strand, 111036 - 111221
Alignment:
| Q |
127 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
226 |
Q |
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| T |
111036 |
taaggggagagagggtctccttgatgaattcctctagttggagtgaaagtgtcagttttgtctccattccacaaaattttgtaactaggcgaagatatgc |
111135 |
T |
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| Q |
227 |
aatgatggattgtttgaatgacattagg-gggaatttacactcctccaaatagttctccacaaattcccaattgatgtgatcataa |
311 |
Q |
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| T |
111136 |
aatcacggataattcgaatgagattaggagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataa |
111221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 127 - 311
Target Start/End: Complemental strand, 24783257 - 24783072
Alignment:
| Q |
127 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
226 |
Q |
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||||||| |||||| ||||||| | ||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |
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| T |
24783257 |
taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc |
24783158 |
T |
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| Q |
227 |
aatgatggattgtttgaatgacattagg-gggaatttacactcctccaaatagttctccacaaattcccaattgatgtgatcataa |
311 |
Q |
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| T |
24783157 |
aatcacgtataatttgaatgagattaggagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataa |
24783072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 127 - 311
Target Start/End: Original strand, 35197735 - 35197920
Alignment:
| Q |
127 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
226 |
Q |
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| T |
35197735 |
taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc |
35197834 |
T |
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| Q |
227 |
aatgatggattgtttgaatgacattag-ggggaatttacactcctccaaatagttctccacaaattcccaattgatgtgatcataa |
311 |
Q |
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| T |
35197835 |
aatcacgtataatttgaatgagattagtagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataa |
35197920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 127 - 311
Target Start/End: Original strand, 49574765 - 49574950
Alignment:
| Q |
127 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
226 |
Q |
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||||||| |||||| ||||||| | ||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |
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| T |
49574765 |
taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc |
49574864 |
T |
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| Q |
227 |
aatgatggattgtttgaatgacattagg-gggaatttacactcctccaaatagttctccacaaattcccaattgatgtgatcataa |
311 |
Q |
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| T |
49574865 |
aatcacgtataatttgaatgagattaggagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataa |
49574950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 127 - 311
Target Start/End: Original strand, 8057085 - 8057270
Alignment:
| Q |
127 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
226 |
Q |
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||||||| |||||| ||||||| | ||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |
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| T |
8057085 |
taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc |
8057184 |
T |
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| Q |
227 |
aatgatggattgtttgaatgacattagg-gggaatttacactcctccaaatagttctccacaaattcccaattgatgtgatcataa |
311 |
Q |
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| T |
8057185 |
aaacacgtataatttgaatgagattaggagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataa |
8057270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 127 - 311
Target Start/End: Original strand, 46021129 - 46021314
Alignment:
| Q |
127 |
taaggggggagagggtctccttaatgaattcctctagtggggatgaaagtgtcagtttgatccccattccacataattttgtagttaggaaaagatatgc |
226 |
Q |
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||||||| |||||| ||||||| | ||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||| |
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| T |
46021129 |
taaggggagagaggatctccttgacgaattcctctagttggagtgaacgtgtcagttttatccccattccacaaaattttgtaactaggcgaagatatgc |
46021228 |
T |
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| Q |
227 |
aatgatggattgtttgaatgacattag-ggggaatttacactcctccaaatagttctccacaaattcccaattgatgtgatcataa |
311 |
Q |
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| T |
46021229 |
aatcacgtataatttgaatgagattagcagggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataa |
46021314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 36027966 - 36027910
Alignment:
| Q |
255 |
gggaatttacactcctccaaatagttctccacaaattcccaattgatgtgatcataa |
311 |
Q |
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| T |
36027966 |
gggaatttacaatcctccaagcaattctccacaaaattccaattgatgcgatcataa |
36027910 |
T |
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