View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_high_28 (Length: 372)
Name: NF5311_high_28
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 45944376 - 45944717
Alignment:
| Q |
11 |
ttattcttataaaggtataatgctttgtagtttgttgaatttgaagtagnnnnnnnnnnnnnnaaatgttttaaaaaattagagtcactttatatcatca |
110 |
Q |
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| T |
45944376 |
ttattcttataaaggtataatgctttgtagtttgttgaatttgaagtagtttttcttttttttaaatgttttaaaaaattagagtcactttatatcatca |
45944475 |
T |
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| Q |
111 |
tcaaattgattttatcagtatagaagttgatttcttcaaccttttaatcaaagaatttgagaatagaaaatgagaggagcaaannnnnnnnnnnnnn-at |
209 |
Q |
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| T |
45944476 |
tcaaattgatcttatcagtatagaagttgatttcttcaaccttttagtcaaagaatttgagaatagaaaatgagaggaacaatttttttttattttttat |
45944575 |
T |
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| Q |
210 |
tattaggcagttatgtagcgtctctttgaatctctttggatgttatgagtcattttatgtgatctttattttcttttcttctgtgtgtcaatgcagcacc |
309 |
Q |
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| T |
45944576 |
tataaggtagttatgtagcgtctctttgaatctcttttgatgttatgagtcattttatgtgatctttatttt-ttttcttc--tgtgtcaatgcagcacc |
45944672 |
T |
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| Q |
310 |
aatgtacacatttatcaaagaagccacatttgctcctccaatctt |
354 |
Q |
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| T |
45944673 |
aatgtacacatttatcaaagaagccacatttgctcctccaatctt |
45944717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 45937928 - 45937965
Alignment:
| Q |
317 |
acatttatcaaagaagccacatttgctcctccaatctt |
354 |
Q |
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| T |
45937928 |
acatttatcaaagaagcaacatttgctccaccaatctt |
45937965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 325
Target Start/End: Complemental strand, 35650518 - 35650449
Alignment:
| Q |
256 |
gagtcattttatgtgatctttattttcttttcttctgtgtgtcaatgcagcaccaatgtacacatttatc |
325 |
Q |
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| T |
35650518 |
gagtcattttatgcgatctatattttttttttttttttgtgtcaatgcaacaccaatatacacatttatc |
35650449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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