View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5311_high_33 (Length: 327)

Name: NF5311_high_33
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5311_high_33
NF5311_high_33
[»] chr6 (26 HSPs)
chr6 (13-308)||(4517454-4517749)
chr6 (90-308)||(4569264-4569483)
chr6 (98-308)||(4623506-4623716)
chr6 (57-308)||(4581172-4581423)
chr6 (57-308)||(4558283-4558534)
chr6 (57-308)||(4586790-4587041)
chr6 (57-303)||(4572124-4572370)
chr6 (54-303)||(4627305-4627554)
chr6 (217-308)||(4503012-4503103)
chr6 (217-308)||(3173321-3173412)
chr6 (54-308)||(4298217-4298471)
chr6 (218-308)||(4488916-4489006)
chr6 (94-299)||(4258904-4259109)
chr6 (132-308)||(4594243-4594419)
chr6 (217-308)||(4482183-4482274)
chr6 (225-296)||(4599489-4599560)
chr6 (225-303)||(4507237-4507315)
chr6 (217-303)||(4561980-4562066)
chr6 (217-303)||(4575773-4575859)
chr6 (218-300)||(4618620-4618702)
chr6 (231-300)||(4513706-4513775)
chr6 (228-308)||(4612437-4612517)
chr6 (215-299)||(4265785-4265869)
chr6 (218-277)||(4565348-4565407)
chr6 (146-291)||(4603357-4603502)
chr6 (254-299)||(4471269-4471314)
[»] chr7 (1 HSPs)
chr7 (217-299)||(3088063-3088145)
[»] chr5 (1 HSPs)
chr5 (215-299)||(24104411-24104495)
[»] scaffold0199 (1 HSPs)
scaffold0199 (220-303)||(1079-1162)
[»] chr8 (5 HSPs)
chr8 (220-303)||(1675842-1675925)
chr8 (57-120)||(16685201-16685264)
chr8 (215-285)||(16685029-16685099)
chr8 (93-167)||(20862664-20862738)
chr8 (250-302)||(20862535-20862587)
[»] scaffold0475 (1 HSPs)
scaffold0475 (94-299)||(2016-2224)
[»] scaffold0288 (1 HSPs)
scaffold0288 (94-299)||(2179-2387)
[»] chr3 (1 HSPs)
chr3 (220-297)||(1282754-1282831)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 4517454 - 4517749
Alignment:
Q  13 tgaacatgcactagctgaactaaatagaacactaggtaaaccatgttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaacta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4517454 tgaacatgcactagctgaactaaatagaacactaggtaaaccatgttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaacta 4517553  T
Q  113 acaggaggaatatgaccatcattggaagaatctttaagtctagcaagaagttcacagaaggggtgatagaaattctttcttattgaatcagaaagagaga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4517554 acaggaggaatatgaccatcattggaagaatctttaagtctagcaagaagttcacagaaggggtgatagaaattctttcttattgaatcggaaagagaga 4517653  T
Q  213 taatgtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4517654 taatgtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 4517749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 90 - 308
Target Start/End: Original strand, 4569264 - 4569483
Alignment:
Q  90 caatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatcttt-aagtctagcaagaagttcacagaaggggtgatagaaattct 188  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||||||| || ||||||||||||||||    
T  4569264 caatatcagaaactaagcaactaacaggaggaataagatcatcattggaagaatcttttaagtttagcaagaagttcacaaaaagggtgatagaaattct 4569363  T
Q  189 ttcttattgaatcagaaagagagataatgtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagt 288  Q
    ||||||||||||||  |||||||| ||| |||||||||| ||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4569364 ttcttattgaatcatcaagagagacaatttcttgactaatatcaccataaccttctgtcggagttaaaccatctggaatagtctcaaaggtaaaatcagt 4569463  T
Q  289 gaaaccatcaaaggcttttg 308  Q
    ||||||||||||||||||||    
T  4569464 gaaaccatcaaaggcttttg 4569483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 98 - 308
Target Start/End: Original strand, 4623506 - 4623716
Alignment:
Q  98 gaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagcaagaagttcacagaaggggtgatagaaattctttcttattg 197  Q
    |||||||||||| |||| || |||| | ||||| || ||| ||| || | |||| | |||||||||||||| ||||| |||||||||||||| |||||||    
T  4623506 gaaactaagcaagtaactggtggaacaagaccagcagtggcagagtcatgaagttttgcaagaagttcacaaaagggatgatagaaattcttccttattg 4623605  T
Q  198 aatcagaaagagagataatgtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatc 297  Q
    ||||||||||||||   ||||||||||||||||||||||| ||||| || || ||||||||||||||||| ||||||||| |||| || |||||||||||    
T  4623606 aatcagaaagagagggtatgtcttgactaacatcaccatcaccttccattggtgttaaaccatctggaatggtctcaaagttaaagtccgtgaaaccatc 4623705  T
Q  298 aaaggcttttg 308  Q
    |||||| ||||    
T  4623706 aaaggcctttg 4623716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 308
Target Start/End: Original strand, 4581172 - 4581423
Alignment:
Q  57 gttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagc 156  Q
    ||||||||||||||||||| ||||||  ||  | | |||||||||||| |||| |||| ||||| | | |||||  | ||| ||| || |||||||||||    
T  4581172 gttcttcagcagcttgtattgtaaaatacatgctattatcagaaactatgcaagtaactggagggacaagaccagaagtggcagagtcattaagtctagc 4581271  T
Q  157 aagaagttcacagaaggggtgatagaaattctttcttattgaatcagaaagagagata-atgtcttgactaacatcaccatcgccttctatcggagttaa 255  Q
    |||||||||||| || || ||   ||| |||||||| ||||| ||| | ||||  ||| ||||||||| ||||||||| |||||||||||||||||||||    
T  4581272 aagaagttcacaaaaaggttgtaggaagttctttctgattgattcacatagagc-atatatgtcttgattaacatcactatcgccttctatcggagttaa 4581370  T
Q  256 accatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 308  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  4581371 accatctggaatagtctcaaaggtaaaatcggtgaaaccatcaaacgcttttg 4581423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 57 - 308
Target Start/End: Original strand, 4558283 - 4558534
Alignment:
Q  57 gttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagc 156  Q
    ||||||||| ||||||||| ||||||| ||  |||||||||||||||| |||| |||| ||||| | | |||||    | | ||| || || ||||||||    
T  4558283 gttcttcagaagcttgtatggtaaaagacatgccaatatcagaaactatgcaagtaactggagggacaagaccagatgttgcagagtcatttagtctagc 4558382  T
Q  157 aagaagttcacagaaggggtgatagaaattctttcttattgaatcagaaagagagataatgtcttgactaacatcaccatcgccttctatcggagttaaa 256  Q
    ||||||||| | ||| || ||   ||| |||||||| ||||| | | |||||| |  |||||||||||||||||| ||||| || ||  | |||||||||    
T  4558383 aagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaa 4558482  T
Q  257 ccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 308  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  4558483 ccatccggaatagtctcaaagctaaaatcagtgaaaccatcaaaggcatttg 4558534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 308
Target Start/End: Original strand, 4586790 - 4587041
Alignment:
Q  57 gttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagc 156  Q
    ||||||||||||||||||||||||| | ||    ||||||||||||||  ||| | || ||||| ||| |||||    | | ||| || |||||||||||    
T  4586790 gttcttcagcagcttgtatagtaaaggacatggtaatatcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagc 4586889  T
Q  157 aagaagttcacagaaggggtgatagaaattctttcttattgaatcagaaagagagataatgtcttgactaacatcaccatcgccttctatcggagttaaa 256  Q
    ||||||||| | ||| || ||   ||| |||||||| ||||| | | |||||| |  |||||||||||||||||||||||| || ||  | |||||||||    
T  4586890 aagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtaaatgtcttgactaacatcaccatcaccatccgttggagttaaa 4586989  T
Q  257 ccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 308  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||||| ||||    
T  4586990 ccatctggaatagtctcaaagctaaaatcagttaaatcatcaaaggcatttg 4587041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 303
Target Start/End: Original strand, 4572124 - 4572370
Alignment:
Q  57 gttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagc 156  Q
    ||||||||||||||||||||||||| | ||  | |||||||||||||| ||||||||| ||| | | | |||||    | | ||| || |||||||||||    
T  4572124 gttcttcagcagcttgtatagtaaaggacatgctaatatcagaaactatgcaactaactggacggacaagaccagatgttgcagagtcattaagtctagc 4572223  T
Q  157 aagaagttcacagaaggggtgatagaaa-ttctttcttattgaatcagaaagagagataatgtcttgactaacatcaccatcgccttctatcggagttaa 255  Q
    ||||||||| | ||| || || |||||| ||||| || ||||| | | |||||| |  |||||||||||||||||| |||||||| ||  | |||| |||    
T  4572224 aagaagttcgcggaaaggttg-tagaaaattcttcctgattgatttacaaagagcgtaaatgtcttgactaacatcgccatcgccatccgttggagataa 4572322  T
Q  256 accatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggc 303  Q
    ||||||||||||| |||||||| ||||||  |||||||||||||||||    
T  4572323 accatctggaatactctcaaagttaaaattggtgaaaccatcaaaggc 4572370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 54 - 303
Target Start/End: Original strand, 4627305 - 4627554
Alignment:
Q  54 catgttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtct 153  Q
    |||||||||||||||||||||| ||||| | || |  |  ||| |||||||||||| |||| || | || | ||||| || |||  || || | |||| |    
T  4627305 catgttcttcagcagcttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtgcaacaagaccagcagtggctgagtcatgaagttt 4627404  T
Q  154 agcaagaagttcacagaaggggtgatagaaattctttcttattgaatcagaaagagagataatgtcttgactaacatcaccatcgccttctatcggagtt 253  Q
    ||||||||||||||  ||||| |||  ||| |||||||||||||| |  ||||||||    ||||||||| ||||||| ||||| |||||||  || |||    
T  4627405 agcaagaagttcaccaaagggctgaaggaagttctttcttattgattgggaaagagatggtatgtcttgagtaacatcgccatcaccttctagtggtgtt 4627504  T
Q  254 aaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggc 303  Q
    ||||||||||| || ||||||||||||||||||  |||||||||||||||    
T  4627505 aaaccatctggtatggtctcaaaggtaaaatcatcgaaaccatcaaaggc 4627554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 4503103 - 4503012
Alignment:
Q  217 gtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 308  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||| || |||||||||||||||||| |||||||||||||||| ||||    
T  4503103 gtcttgactaacatcaccatcaccttccaccggagttaaaccatctggtatggtctcaaaggtaaaatcattgaaaccatcaaaggcatttg 4503012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 3173321 - 3173412
Alignment:
Q  217 gtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 308  Q
    ||||||||||||||||||||| ||||| || | ||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||    
T  3173321 gtcttgactaacatcaccatcaccttccattgaagttaaaccatctggtatagtctcaaagttaaaatcattgaaaccatcaaaggcatttg 3173412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 54 - 308
Target Start/End: Complemental strand, 4298471 - 4298217
Alignment:
Q  54 catgttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtct 153  Q
    |||||||||| ||||||||||| ||||| | || |  || ||||| |||||||||| |||| || || | | ||||| || ||| ||||||   |||| |    
T  4298471 catgttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaactggtggtacaagaccagcagtggcagaatcacgaagttt 4298372  T
Q  154 agcaagaagttcacagaaggggtgatagaaattctttcttattgaatcagaaagagagataatgtcttgactaacatcaccatcgccttctatcggagtt 253  Q
    ||||||||||||||  ||||| |||  ||| |||||||| ||||| |  ||||||||    ||||||||| ||||||| ||||| |||||  | |||||     
T  4298371 agcaagaagttcaccaaagggctgaaggaagttctttctgattgattgggaaagagatggtatgtcttgagtaacatctccatcaccttccgttggagtc 4298272  T
Q  254 aaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 308  Q
    | |||||||||||||||||||||| |||| |  |||||||||||||| |||||||    
T  4298271 agaccatctggaatagtctcaaagctaaagttggtgaaaccatcaaaagcttttg 4298217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 4489006 - 4488916
Alignment:
Q  218 tcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 308  Q
    |||||||||||||| ||||| || ||| | |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  4489006 tcttgactaacatcgccatcaccatctgttggagttaaaccatctggaatagtctcaaagctaaaatcagttaaaccatcaaaggcatttg 4488916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 299
Target Start/End: Complemental strand, 4259109 - 4258904
Alignment:
Q  94 atcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagcaagaagttcacagaaggggtgatagaaattctttctt 193  Q
    |||||||||||||||| ||||||| |||| |  ||||  | |||  || |||| |||| |||||||||||||||  ||||| |||  ||| |||||||||    
T  4259109 atcagaaactaagcaagtaacaggtggaacaataccagtagtggctgagtcttgaagtttagcaagaagttcaccaaagggctgaaggaagttctttctt 4259010  T
Q  194 attgaatcagaaagagagataatgtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaac 293  Q
    || || | |||||| |||   | ||||||| ||||||| ||||| ||||| |  ||||| | ||||||| ||||||||||||||||||||||| ||||||    
T  4259009 atagattgagaaagggagggtacgtcttgagtaacatcgccatcaccttccactggagtcagaccatcttgaatagtctcaaaggtaaaatcaatgaaac 4258910  T
Q  294 catcaa 299  Q
    ||||||    
T  4258909 catcaa 4258904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 132 - 308
Target Start/End: Original strand, 4594243 - 4594419
Alignment:
Q  132 cattggaagaatctttaagtctagcaagaagttcacagaaggggtgatagaaattctttcttattgaatcagaaagagagataatgtcttgactaacatc 231  Q
    |||||| ||| || |||||||| | |||||||||||| ||||| | |  ||||||||||||||| || | || |||||||   |||||||||||||||||    
T  4594243 cattggtagagtcattaagtcttgtaagaagttcacaaaagggtttaaggaaattctttcttatagattgagcaagagagggtatgtcttgactaacatc 4594342  T
Q  232 accatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 308  Q
    |||||| ||||| || || |||| ||||||||| || || |||||| ||||| ||| ||||||||| ||||| ||||    
T  4594343 accatcaccttccattggtgttagaccatctggtatggtttcaaagctaaaaccagggaaaccatctaaggcatttg 4594419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 4482183 - 4482274
Alignment:
Q  217 gtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 308  Q
    ||||||||| || ||| |||| ||||| || ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||    
T  4482183 gtcttgacttacttcatcatcaccttcaattggagttaaaccatctggtatcgtttcaaaggtaaaatcagtgaaaccatcaaaggcttttg 4482274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 4599489 - 4599560
Alignment:
Q  225 taacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccat 296  Q
    ||||||||||||| || ||||| |||||||||||||||||||||||||| |||| |||||||||||||||||    
T  4599489 taacatcaccatcaccatctattggagttaaaccatctggaatagtctcgaaggaaaaatcagtgaaaccat 4599560  T

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Target: chr6; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 4507237 - 4507315
Alignment:
Q  225 taacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggc 303  Q
    ||||||||||||| || || || ||||||||||||||||| | |||||||||| |||||||||||||||||||||||||    
T  4507237 taacatcaccatcaccatccattggagttaaaccatctggtagagtctcaaagttaaaatcagtgaaaccatcaaaggc 4507315  T

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Target: chr6; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 4561980 - 4562066
Alignment:
Q  217 gtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggc 303  Q
    ||||||||||| ||||||||| || ||  | ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||    
T  4561980 gtcttgactaatatcaccatcaccatcctttggagttaaaccatctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggc 4562066  T

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Target: chr6; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 4575773 - 4575859
Alignment:
Q  217 gtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggc 303  Q
    ||||||||| ||||||||||  || ||  | ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||    
T  4575773 gtcttgacttacatcaccattaccatcctttggagttaaaccatctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggc 4575859  T

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Target: chr6; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 218 - 300
Target Start/End: Original strand, 4618620 - 4618702
Alignment:
Q  218 tcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaa 300  Q
    |||||||||||||||||||| ||||| || || |||||||||||||||||  |||||||| |||| || ||||||||||||||    
T  4618620 tcttgactaacatcaccatcaccttccattggtgttaaaccatctggaatgctctcaaagttaaagtccgtgaaaccatcaaa 4618702  T

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Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 4513775 - 4513706
Alignment:
Q  231 caccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaa 300  Q
    |||||||||| || || |||||||||||||| |||||||||||||||  |||||| ||||||||||||||    
T  4513775 caccatcgccatccattggagttaaaccatcaggaatagtctcaaagcgaaaatcggtgaaaccatcaaa 4513706  T

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Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 4612517 - 4612437
Alignment:
Q  228 catcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttg 308  Q
    ||||||||||||||||  | | || || ||||||||| |||| ||||||||||||||||||||||||| ||||||| ||||    
T  4612517 catcaccatcgccttcgtttgaaggtagaccatctggtatagcctcaaaggtaaaatcagtgaaaccaacaaaggcatttg 4612437  T

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Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 4265869 - 4265785
Alignment:
Q  215 atgtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaa 299  Q
    ||||||||| || ||||||||| |||||| || ||||||| ||||||||| || ||||||||  |||| ||| ||||||||||||    
T  4265869 atgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaa 4265785  T

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Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 4565348 - 4565407
Alignment:
Q  218 tcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaag 277  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||| || || ||||||    
T  4565348 tcttgactaacatcaccatcaccttctatcggtgttagaccatctggtatggtttcaaag 4565407  T

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Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 291
Target Start/End: Original strand, 4603357 - 4603502
Alignment:
Q  146 ttaagtctagcaagaagttcacagaaggggtgatagaaattctttcttattgaatcagaaagagagataatgtcttgactaacatcaccatcgccttcta 245  Q
    |||||||| | |||||||||||| ||||| | |  ||||||||||||||| || | ||||| |||    |  ||||||||||||| | |||| ||||| |    
T  4603357 ttaagtcttgtaagaagttcacaaaagggtttaaggaaattctttcttatagattgagaaatagaaggtacatcttgactaacattatcatcaccttcca 4603456  T
Q  246 tcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaa 291  Q
    |||| ||||  |||||||| || || |||||| |||||||||||||    
T  4603457 tcggtgttagtccatctgggattgtttcaaagctaaaatcagtgaa 4603502  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 4471269 - 4471314
Alignment:
Q  254 aaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaa 299  Q
    ||||||| |||||| ||||||||| |||| ||||||||||||||||    
T  4471269 aaaccatttggaatggtctcaaagttaaagtcagtgaaaccatcaa 4471314  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 3088063 - 3088145
Alignment:
Q  217 gtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaa 299  Q
    ||||||||||||||||||||  ||||| || ||||||| ||||||| | ||||||||||||  ||||||||||||||||||||    
T  3088063 gtcttgactaacatcaccattaccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaa 3088145  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 24104411 - 24104495
Alignment:
Q  215 atgtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaa 299  Q
    ||||||||| |||||||||||| |||||| || ||||||| ||||||||| || ||||||||| |||| ||| ||||||||||||    
T  24104411 atgtcttgagtaacatcaccattgccttccattggagttagaccatctggtatggtctcaaagttaaagtcattgaaaccatcaa 24104495  T

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Target: scaffold0199 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 1079 - 1162
Alignment:
Q  220 ttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggc 303  Q
    |||||||||||||||||| |||||||  || |||| ||||||||| || || |||||| ||||||||||||||||||| |||||    
T  1079 ttgactaacatcaccatcaccttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggc 1162  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 1675842 - 1675925
Alignment:
Q  220 ttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggc 303  Q
    |||||||||||||||||| |||||||  || |||| ||||||||| || || |||||| ||||||||||||||||||| |||||    
T  1675842 ttgactaacatcaccatcaccttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggc 1675925  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 16685264 - 16685201
Alignment:
Q  57 gttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggagg 120  Q
    ||||||||||||||||||||||||||| ||  | |||||||||||||| |||| |||| |||||    
T  16685264 gttcttcagcagcttgtatagtaaaagacatgctaatatcagaaactatgcaagtaactggagg 16685201  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 16685099 - 16685029
Alignment:
Q  215 atgtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatc 285  Q
    ||||||||||||||||| ||||| || ||  | |||| |||||||| |||||||||||||||| |||||||    
T  16685099 atgtcttgactaacatcgccatcaccatccgttggaggtaaaccatatggaatagtctcaaagctaaaatc 16685029  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 20862738 - 20862664
Alignment:
Q  93 tatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagcaagaagttcac 167  Q
    ||||||||||||||||| |||||||||| ||| |||||   |||||||| || | |||| | |||||||||||||    
T  20862738 tatcagaaactaagcaagtaacaggaggtataagaccagatttggaagagtcatgaagtttggcaagaagttcac 20862664  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 20862587 - 20862535
Alignment:
Q  250 agttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaagg 302  Q
    |||| ||||||||||||  |||||||||  ||| |||||||||||||||||||    
T  20862587 agttgaaccatctggaacggtctcaaagcgaaagtcagtgaaaccatcaaagg 20862535  T

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Target: scaffold0475 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 299
Target Start/End: Original strand, 2016 - 2224
Alignment:
Q  94 atcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagcaagaagttcacagaaggggtgatagaaattctttctt 193  Q
    |||||||||||||| | | || ||||| ||| |||||  ||||| ||| || | |||||||||||||||||| |  |||  ||||  ||| || |||||     
T  2016 atcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagcaagaagttcgcgaaagaagtgaaggaagttttttctg 2115  T
Q  194 attgaatcagaaagagagataatgtcttgactaacat---caccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtga 290  Q
    ||||| | | |||||||||  ||||||||||||||||   || ||||  |||| |  |||||||||||||| ||||||||||| |||  |||||||| ||    
T  2116 attgatttacaaagagagagtatgtcttgactaacattaccatcatcatcttccactggagttaaaccatcgggaatagtctcgaagcaaaaatcagcga 2215  T
Q  291 aaccatcaa 299  Q
    |||||||||    
T  2216 aaccatcaa 2224  T

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Target: scaffold0288 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 299
Target Start/End: Complemental strand, 2387 - 2179
Alignment:
Q  94 atcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagcaagaagttcacagaaggggtgatagaaattctttctt 193  Q
    |||||||||||||| | | || ||||| ||| |||||  ||||| ||| || | |||||||||||||||||| |  |||  ||||  ||| || |||||     
T  2387 atcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagcaagaagttcgcgaaagaagtgaaggaagttttttctg 2288  T
Q  194 attgaatcagaaagagagataatgtcttgactaacatcaccatcgccttctatc---ggagttaaaccatctggaatagtctcaaaggtaaaatcagtga 290  Q
    ||||| | | |||||||||  |||||||||||||||| ||||||  | |||  |   |||||||||||||| ||||||||||| |||  |||||||| ||    
T  2287 attgatttacaaagagagagtatgtcttgactaacattaccatcatcatcttccactggagttaaaccatcgggaatagtctcgaagcaaaaatcagcga 2188  T
Q  291 aaccatcaa 299  Q
    |||||||||    
T  2187 aaccatcaa 2179  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 1282754 - 1282831
Alignment:
Q  220 ttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatc 297  Q
    |||||||||||||||||| |||||||  |  |||| ||||||||| || || |||||| |||||||||||||||||||    
T  1282754 ttgactaacatcaccatcaccttctagtgatgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatc 1282831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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