View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_high_34 (Length: 325)
Name: NF5311_high_34
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 43 - 308
Target Start/End: Original strand, 54450654 - 54450919
Alignment:
| Q |
43 |
agtaagtaattaaactaacctgaggaatttgggcaacgtactgacgaggattgacctgcttgacagacaattgacaatccttgagaaggtcgagtgtatc |
142 |
Q |
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| T |
54450654 |
agtaagtaattaacctaacctgaggaatttgggcaacgtactgacgaggattgacctgcttgacagacaattgacaatccttgagaaggtcgagtgtatc |
54450753 |
T |
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| Q |
143 |
agaagacatacgacctttacttggtaaacccagacggatctcttgtctggagactgtgttgccattaagaacttgatgatgagtctcggaaattgaggtt |
242 |
Q |
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| T |
54450754 |
agaagacatacgacctttacttggtaaacccagacggatctcttgtctggagactgtgttcccattaagaacttgatgatgagtctcggaaattgaggtt |
54450853 |
T |
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| Q |
243 |
gaggaggcgtagcagcaatagcgaggtaaacgaatttggctcatcatcgtcaacattgcgtctgtg |
308 |
Q |
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| T |
54450854 |
gatgaggcgtagcagcaatagagaggtaaacgaatttggctcatcatcgtcaacattgcgtttgtg |
54450919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 60 - 172
Target Start/End: Original strand, 429393 - 429505
Alignment:
| Q |
60 |
acctgaggaatttgggcaacgtactgacgaggattgacctgcttgacagacaattgacaatccttgagaaggtcgagtgtatcagaagacatacgacctt |
159 |
Q |
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|||||||||||||| ||||| ||||| | |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |
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| T |
429393 |
acctgaggaatttgagcaacatactgtctgggattgacttgcttgacagacaattgacagtccttgagaaggtcgagtgtgtcagaagacattcgacctt |
429492 |
T |
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| Q |
160 |
tacttggtaaacc |
172 |
Q |
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| T |
429493 |
tgcttggcaaacc |
429505 |
T |
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