View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_high_38 (Length: 300)
Name: NF5311_high_38
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_38 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 41572593 - 41572399
Alignment:
| Q |
21 |
atgtattctttgccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgttcagcgg |
120 |
Q |
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| T |
41572593 |
atgtattcttagccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgttcagcgg |
41572494 |
T |
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| Q |
121 |
ttttagcagtaaacaagtttgaggctggggtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatta |
215 |
Q |
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| T |
41572493 |
ttttagcagtaaacaagtttgaggctggggtatgctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagccttatta |
41572399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 26 - 215
Target Start/End: Original strand, 27753914 - 27754102
Alignment:
| Q |
26 |
ttctttgccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgttcagcggtttta |
125 |
Q |
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| T |
27753914 |
ttcttagccgtttgaaggtgccggcgtgtttgttctacgagtgaagttggaatccaaaagcgtgcctcttacggtaatgaggaggtgttcagcggtttta |
27754013 |
T |
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| Q |
126 |
gcagtaaacaagtttgaggctggggtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatta |
215 |
Q |
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| T |
27754014 |
gcagt-aacaagtttgaggctggggtatgctgtttatattgcggtgacccgtgctggttttgtgcagttttgcatatggcagcctcatta |
27754102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 21942099 - 21941917
Alignment:
| Q |
32 |
gccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaa-tgaggaggtgttcagcggttttagcagt |
130 |
Q |
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||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||| || ||||||| |||| || | | | || || ||||| |||| |
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| T |
21942099 |
gccgtttaaagatgccgacgtgtttgttctacgagtggtgttggaatccaaaagcatgtctcttacagtaacggacgggtttctctgcagttttcgcag- |
21942001 |
T |
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| Q |
131 |
aaacaagtttgaggctggggtatcctgtg-tatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatt |
214 |
Q |
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| T |
21942000 |
ctacaagattgaggctggggtatgccgtgttaaattgcggtgacatgtgctgg-tttgtgcaggatggtatatggcagcctcatt |
21941917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 138683 - 138728
Alignment:
| Q |
37 |
ttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaa |
82 |
Q |
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| T |
138683 |
ttgaacgtgccggcttgtttgttttacgagtggagttggaacccaa |
138728 |
T |
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