View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5311_high_43 (Length: 281)
Name: NF5311_high_43
Description: NF5311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5311_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 39627482 - 39627207
Alignment:
| Q |
1 |
agttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaacttgatttgt |
100 |
Q |
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| T |
39627482 |
agttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaacttgatttgt |
39627383 |
T |
|
| Q |
101 |
ccttccagtactttccgtttctgtatcgatatcagtatctgtatcattatcagtgtccgtgtcttcactttcactatcactttcttcttctaaaaggtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
39627382 |
ccttccagtactttccgtttctgtatcgatatcagtatctgtatcattatcagtgtccgtgtcttcactttcactatcactttcttcttccaaaatgtac |
39627283 |
T |
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| Q |
201 |
aggtaatagatggctatcaacgcagcaataataatcttattcatacgtgtacaatggaagattggcctttgcttct |
276 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| | |||||| ||| | |||||||||||||| |
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| T |
39627282 |
aggtaatagatgcctatcaacgcagcaataataatcttattcatatgcgtacaaccgaacagtggcctttgcttct |
39627207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 39616752 - 39616485
Alignment:
| Q |
3 |
ttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaacttgatttgtcc |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
39616752 |
ttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaggaacttcatttgtcc |
39616653 |
T |
|
| Q |
103 |
ttccagtactttccgtttctgtatcgatatcagtatctgtatcattatcagtgtccgtgtcttcactttcactatcactttcttcttctaaaaggtacag |
202 |
Q |
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| T |
39616652 |
ttccagtactttcagtttccgtatcaatatcagtatctgtatcactatca------ctgtcttcactttcactgtcactttcttcttctaaaaggtacag |
39616559 |
T |
|
| Q |
203 |
gtaatagatggctatcaacgcagcaataataatcttattcatacgtgtacaatggaagattggcctttgcttct |
276 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
39616558 |
gtaatagatgcctatcaacgcagcaataataatcttattcatacgcgtacaatggaagattggcctttgattct |
39616485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 39583520 - 39583646
Alignment:
| Q |
58 |
gcagctgtttccttttctattgatcatcaagaacttgatttgtccttccagtactttccgtttctgtatcgatatcagtatctgtatcattatcagtgtc |
157 |
Q |
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|||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||| ||||| |||||||||| |||||| |||| ||||| |
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| T |
39583520 |
gcagttgtttccttttctattgatcag---gaacttggtttgtccttcaagtactttcagtttcggtatcactatcagtatccgtatcactatctgtgtc |
39583616 |
T |
|
| Q |
158 |
cgtgtcttcactttcactatcactttcttc |
187 |
Q |
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| T |
39583617 |
tgtgtcttcactttcactgtcactttcttc |
39583646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 24200402 - 24200314
Alignment:
| Q |
3 |
ttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaac |
91 |
Q |
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||||||||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||| |||||||||||||||||| |||| |
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| T |
24200402 |
ttatgagagcataaagctcaagtttccaaatcttcccttttctactaacaaagttgcagctgttttcttttctattgatcatcaggaac |
24200314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 47532847 - 47532772
Alignment:
| Q |
148 |
tatcagtgtccgtgtcttcactttcactatcactttcttcttctaaaaggtacaggtaatagatggctatcaacgcagc |
226 |
Q |
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||||||| || ||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||| |||||| ||||| |
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| T |
47532847 |
tatcagtatctgtggcttcactttcactgtcacttt---cttccaaaaggtacaggtcatagatgcatatcaaggcagc |
47532772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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